BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3308.p
         (441 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982318|ref|YP_001354762.1| cytochrome c [Janthinobacterium...   288   5e-79
gi|152982006|ref|YP_001354842.1| cytochrome c oxidase subunit II...    62   5e-11

>gi|152982318|ref|YP_001354762.1| cytochrome c [Janthinobacterium
           sp. Marseille]
          Length = 428

 Score =  288 bits (737), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 166/399 (41%), Positives = 227/399 (56%), Gaps = 23/399 (5%)

Query: 34  QQLVQRGEYLAKAGDCVACHTAKGGKPFAGGLPIATPVGTVYSSNITPDKENGIGNYSEE 93
           QQLVQ GEYLA+ G+C++CHT++GG+ +AGG  + TP G +Y+SN+TPD E G+G ++  
Sbjct: 45  QQLVQ-GEYLARVGNCMSCHTSRGGESYAGGRAVPTPFGNIYTSNLTPDAETGLGKWNSN 103

Query: 94  DFDNALRHGIRKDGASLYPAMPYPSYAKVKPADVKALYAYFMNGVQADPAPNRGVDITWP 153
           DF  A+  G  KDG+ LYPA PY +Y KV  AD  A++AY    + A    NR  D+ +P
Sbjct: 104 DFWQAMHDGKSKDGSLLYPAFPYTNYTKVTRADSDAIFAYLQT-LPAVSQQNRAPDLRFP 162

Query: 154 LSMRWPLSIWRKV-FAPAVALDGPEDNSPLVRGQYLVEGLGHCGACHTPRGVGMQEKALS 212
              R  L +WR + F P    +  + +    RG YL +GLGHC ACH+PR     +    
Sbjct: 163 YDNRVALYVWRALYFRPGQYANDDKQSVEWNRGAYLAQGLGHCSACHSPR-----DALGG 217

Query: 213 NDSSLYLSGGVID--GYLANNLRGDARDGLGNWSQADIVAFLKTGRNSHSAAFGGMADVV 270
            D    L GG+I    + A  L GDA+  LGNW    + A +KTG     +  G MA+VV
Sbjct: 218 TDLKAELGGGMIPVLNWYAPPLNGDAQTSLGNWETEHLAALMKTGTAPSRSVSGPMAEVV 277

Query: 271 AQSTQYLSEADLSAMATYLKSL-----KPVKEGTAALAYDDKTHQALRKGSDQSPGAMTF 325
             S QY  + D+ AMA YLKSL      PV    AA +  D+T + + K      GA  +
Sbjct: 278 FGSLQYAKDEDIKAMALYLKSLPQQIPAPV---AAAESVPDETKKNMIKA-----GAKLY 329

Query: 326 LNNCAACHRSSGKGYEETFPTLALSPTVNADNPASLIRIVLEGAEMPWTHKAPTQFAMPG 385
            N CA+CH+ SGKG    +P LA S  +      + IR+VL G   P T   P  + MP 
Sbjct: 330 ENQCASCHQESGKGVAAIYPALAGSRAITTPVATNAIRMVLHGGYAPSTAGNPRPYGMPP 389

Query: 386 FASRLSDQEVADVVTFIRSSWGNQAASVSASDVAKVRQQ 424
           F   ++D+EVA VVT+IR+SWGNQA +VS +DV + R +
Sbjct: 390 FGHSMTDEEVASVVTYIRNSWGNQATAVSPNDVNRYRSR 428


>gi|152982006|ref|YP_001354842.1| cytochrome c oxidase subunit II
           [Janthinobacterium sp. Marseille]
          Length = 386

 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 12/92 (13%)

Query: 321 GAMTFLNNCAACHRSSGKGYEETFPTLALSPTVNADNPASLIRIVLEGAEMPWTHKAPTQ 380
           G   +  NC ACH+++GKG   +FP L  SP V     A+ I +V+EG           +
Sbjct: 294 GEKVYTANCIACHQANGKGVPGSFPALDASPIVTGPKAAN-IHMVMEG-----------K 341

Query: 381 FAMPGFASRLSDQEVADVVTFIRSSWGNQAAS 412
            AMP +   LSD E+A V+T+ R+ W N+A+ 
Sbjct: 342 GAMPAWKPVLSDTEIAAVITYTRNHWSNKASE 373


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.130    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,029,589
Number of extensions: 44111
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 2
Length of query: 441
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 355
Effective length of database: 903,079
Effective search space: 320593045
Effective search space used: 320593045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)