BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3300.p (361 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 235 3e-63 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 226 2e-60 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 196 2e-51 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 159 3e-40 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 146 2e-36 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 235 bits (600), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 126/298 (42%), Positives = 188/298 (63%), Gaps = 14/298 (4%) Query: 3 SVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILI 62 S++++ ++KQFG+ + V +D GE T L+GPSGCGK+TLLR++AGLE+ G++L+ Sbjct: 2 SIEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 63 GGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTL----AKKDKSFVEERVKKAA 118 G + ++R + VFQ+YAL+ HMTV +N+AF L + + +S ++E+V K Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKVTKLL 121 Query: 119 DILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKE 178 +++ L+ L DRYP QLSGGQRQR+A+ RA+ +P+V L DEP LDAK+R ++R ++ Sbjct: 122 ELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRR 181 Query: 179 LHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVAGFIGSPA 238 LH L TSI+VTHDQ EA+ +ADQIV+M G VEQ G P D+Y++PA+ FV GF+G+ Sbjct: 182 LHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFLGN-- 239 Query: 239 MNFIPATLRRGAGAAEVEFADGTRVPAPYGSALQGNDGQQVTYGVRPEHLSIGAAGTG 296 +N + G + + G AP + Q G + Y VRP L + TG Sbjct: 240 VNLFHGRVHEG-----ILQSSGIAFEAPEHAETQDTKG--IGY-VRPHDLEVDRYTTG 289 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 226 bits (576), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 110/236 (46%), Positives = 158/236 (66%) Query: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 MA ++IR + ++FG ++ + + I GEF L+GPSGCGK+TLLRM+AG + G+I Sbjct: 1 MALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQI 60 Query: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKSFVEERVKKAADI 120 L+ G + V P+ R + VFQNYAL+PHMTV N+AF L +A K+ ++++V +A + Sbjct: 61 LLDGVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALED 120 Query: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 + L RYP +LSGGQRQRV++ RA+V P++ L DEPLS LDA+LR QM+ E+ L Sbjct: 121 VRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQ 180 Query: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVAGFIGS 236 + + T IYVTHDQ EA+ ++ +I VM G VEQ P +Y +P + FVA FIG+ Sbjct: 181 KEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFIGT 236 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 196 bits (497), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 104/256 (40%), Positives = 161/256 (62%), Gaps = 14/256 (5%) Query: 2 ASVQIRAVK--KQFGST--QIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITG 57 A +Q+ ++ Q GS +I+ + + GE L+G SGCGK+T+LR +AG E + Sbjct: 9 AHLQLETIRVGYQLGSHMHEIVHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIA 68 Query: 58 GEILIGGTVVNNVQ----PKDRDIAMVFQNYALYPHMTVRDNMAFSL-TLAKKDKSFVEE 112 G I +GG ++N Q P+ R + +VFQ+YAL+PH++V DN+ F L LA +++ Sbjct: 69 GRITLGGKELSNAQHTTVPEARHVGVVFQDYALFPHLSVSDNIGFGLRKLAAAERN---G 125 Query: 113 RVKKAADILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQM 172 R+ K ++GL ++P +LSGGQ+QRVA+ RA+ P + L DEP SNLD LR ++ Sbjct: 126 RINKLLALVGLQAQEKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERL 185 Query: 173 RTEIKELHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVAG 232 +E++++ + + TT++ VTHDQ EA +ADQI VM+DG++ Q + +LY PAN FVA Sbjct: 186 ASEVRDILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDQAYNLYHRPANRFVAD 245 Query: 233 FIGSPAMNFIPATLRR 248 FIG F+P T+ + Sbjct: 246 FIGLGV--FVPGTVDK 259 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 159 bits (401), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 128/214 (59%), Gaps = 7/214 (3%) Query: 1 MASVQIRAVKKQFG----STQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEIT 56 + ++ I+ V K F + Q +R V++ I GEF L+G SGCGKSTLLR++AG E + Sbjct: 11 LPAIDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTS 70 Query: 57 GGEILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKSFVEERVKK 116 G + G ++ P+ MVFQ+Y L+P +TV++N+ F K+ +EE Sbjct: 71 SGSANMYGMPIDGPSPER---GMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAY 127 Query: 117 AADILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEI 176 D++GL + + YP QLSGG +QRVA+ R + D +V L DEP LDA R +++ ++ Sbjct: 128 YTDMVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDL 187 Query: 177 KELHQRLKTTSIYVTHDQIEAMTMADQIVVMRDG 210 E+ +R K T ++VTH EA+ ++D++VVM G Sbjct: 188 LEIWERTKVTVVFVTHAVEEAVMLSDRVVVMTAG 221 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 140/244 (57%), Gaps = 14/244 (5%) Query: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 M + I VKK +GS Q+++G+ +D+ GE ++G SG GKSTLLR + GLE I G I Sbjct: 1 MPLIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSI 60 Query: 61 LIGGTVVNNVQPKDRD----IAMVFQNYALYPHMTVRDNMAFSLTLAK----KDKSFVEE 112 + G+ + + + R+ + M+FQ + L+PH++V N+ S + K KD + Sbjct: 61 SVAGSHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARAL-- 118 Query: 113 RVKKAADILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQM 172 K + +GL++ D +P QLSGGQ+QRVA+ RA+ +PQ L DE S LD +L ++ Sbjct: 119 -AMKNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEV 177 Query: 173 RTEIKEL-HQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVA 231 ++ L H+ + T I VTH+ A + D++V M G V + G P D++ +PA + Sbjct: 178 LNVVRGLAHEGM--TLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELK 235 Query: 232 GFIG 235 F+G Sbjct: 236 QFLG 239 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 797,803 Number of extensions: 33515 Number of successful extensions: 298 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 220 Number of HSP's successfully gapped: 64 Length of query: 361 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 277 Effective length of database: 910,473 Effective search space: 252201021 Effective search space used: 252201021 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)