BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3297.p
         (262 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981662|ref|YP_001352127.1| GntR family transcriptional reg...    67   9e-13
gi|152981038|ref|YP_001353695.1| GntR family transcriptional reg...    54   8e-09

>gi|152981662|ref|YP_001352127.1| GntR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 251

 Score = 67.4 bits (163), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 115/215 (53%), Gaps = 17/215 (7%)

Query: 6   IEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIE 65
           +E QRL+  + + L++LI++G    G +L +ER++  +LG+SR  LREA+  L  EG I+
Sbjct: 20  MERQRLHDAVVEHLQRLIIEGVLTPGMKL-NEREVCERLGISRTPLREAMKVLASEGLID 78

Query: 66  VRMGSGIYVCPPVQRERRSDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQIAAVEEA 125
           +    G +V       + +D    E   E++   E + GE+   AA+  S  +IA ++  
Sbjct: 79  IVPNRGAFVS------KMNDTEIWEA-FEMMSGLEALSGEL---AAERISPAEIADIKVL 128

Query: 126 Y-ALMMAHAEAGIDPLEA-DRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFERLHSHFD 183
           + A+++  A+  +    + ++  H ++ EA  NS+L  +   + + RL  L  R  S+F 
Sbjct: 129 HQAMLVCRAQNDLPGYYSRNQTIHNKINEAARNSMLRQIYLSV-NRRLLAL--RFKSNFK 185

Query: 184 GTRVWQEAIEEHGLIMQALRERNAEQARAAMRRHM 218
             + W  AI EH  ++QAL  R+ ++    +R+H+
Sbjct: 186 EEK-WDRAINEHDEMIQALEARDGKRLAGILRQHL 219


>gi|152981038|ref|YP_001353695.1| GntR family transcriptional
          regulator [Janthinobacterium sp. Marseille]
          Length = 502

 Score = 54.3 bits (129), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 40/64 (62%)

Query: 11 LYRQISDQLRKLIVDGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIEVRMGS 70
          L+ ++   +R+LI+DG   VG  LP+ R LA  LGVSR ++  A   L  EG IE R+GS
Sbjct: 24 LHARVQRAIRQLILDGALDVGRPLPASRALAQSLGVSRDTVESAYGQLHAEGFIERRVGS 83

Query: 71 GIYV 74
          G YV
Sbjct: 84 GSYV 87


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 552,739
Number of extensions: 22179
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 2
Length of query: 262
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 181
Effective length of database: 921,564
Effective search space: 166803084
Effective search space used: 166803084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)