BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3296.p
         (185 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981876|ref|YP_001352372.1| hypothetical protein mma_0682 [...   213   8e-57
gi|152979777|ref|YP_001353937.1| hypothetical protein mma_2247 [...   124   4e-30

>gi|152981876|ref|YP_001352372.1| hypothetical protein mma_0682
           [Janthinobacterium sp. Marseille]
          Length = 176

 Score =  213 bits (541), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 120/152 (78%), Gaps = 4/152 (2%)

Query: 34  CGTAPTAPPISRLPGAPQSQVPALPASDNGNEVALYALSLIDTGYRFGGKNPSAGLDCSG 93
           CGT+    P+ R P A        P S+ GNE+ALYA+ +IDTGY+FGGKNP AGLDCSG
Sbjct: 29  CGTST---PVKR-PAARAIMYEPQPVSEKGNEIALYAMGMIDTGYQFGGKNPEAGLDCSG 84

Query: 94  MVTYIFGQAANYHISGSAADIARRGRQIDPAQLRAGDLVFFNTENRPFSHVGIYLGDGRF 153
           MV+YI+ QA N ++SGSAADIARRG++IDP  LR GDLVFFNT NR FSHVG+Y+GDGRF
Sbjct: 85  MVSYIYRQALNMNVSGSAADIARRGKEIDPRTLRPGDLVFFNTMNRSFSHVGVYIGDGRF 144

Query: 154 VHAPSTNGKVHISRMDNPYFSRRFEMARTYFN 185
           +HAPS+ GKV I RMDN YF+ RFEMARTYF+
Sbjct: 145 IHAPSSKGKVRIERMDNVYFAPRFEMARTYFD 176


>gi|152979777|ref|YP_001353937.1| hypothetical protein mma_2247
           [Janthinobacterium sp. Marseille]
          Length = 183

 Score =  124 bits (311), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 98/160 (61%), Gaps = 7/160 (4%)

Query: 23  AALAAALVLAACGTAPTAPPISRLPGAPQSQVPALPA-SDNGNEVALYALSLIDTGYRFG 81
           A LA +L+ ++  +A   PP         +Q+  L + S++ +E+A+ A+ ++   Y++G
Sbjct: 17  AVLAFSLLASSAWSAEAPPP------EQNAQISKLQSISNHASELAMQAMGMLGIHYKYG 70

Query: 82  GKNPSAGLDCSGMVTYIFGQAANYHISGSAADIARRGRQIDPAQLRAGDLVFFNTENRPF 141
           G  P +GLDCSG+V +IF +     +  ++ +I+  G+ +D   L+ GDLVF+NT  + F
Sbjct: 71  GSTPESGLDCSGLVRHIFKETWGLILPRTSVEISHVGKHVDKDDLQPGDLVFYNTLRKGF 130

Query: 142 SHVGIYLGDGRFVHAPSTNGKVHISRMDNPYFSRRFEMAR 181
           SHVGIYLGD +F+H+PS  G+V I  MD  Y+ +RF   R
Sbjct: 131 SHVGIYLGDRKFIHSPSAGGQVRIESMDIAYWKKRFNGGR 170


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 427,859
Number of extensions: 18114
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 107
Effective length of database: 932,655
Effective search space: 99794085
Effective search space used: 99794085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)