BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3294.p
         (346 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981474|ref|YP_001352374.1| CDP-6-deoxy-delta-3,4-glucoseen...   551   e-158

>gi|152981474|ref|YP_001352374.1| CDP-6-deoxy-delta-3,4-glucoseen
           reductase [Janthinobacterium sp. Marseille]
          Length = 342

 Score =  551 bits (1420), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 247/341 (72%), Positives = 303/341 (88%)

Query: 1   MSFQVTVQPSGRQFTCDADESILTAAIRAGVGLPYGCKNGACSSCKGKLLSGQVEHGAHQ 60
           M+FQVTV+PSGRQF+CDADE+IL AA+RAGVGLPYGCKNGACSSCKG +LSG V HG HQ
Sbjct: 1   MTFQVTVKPSGRQFSCDADETILNAALRAGVGLPYGCKNGACSSCKGLVLSGSVTHGPHQ 60

Query: 61  ERALSAHEEQLGYALFCVAKPQSDVTIEAREVAGVGEIPVRKLPVRVAKLEKVADDVIIL 120
            RALSA +E++G++LFC A+P  DV IEAREV G+GE PV+KLPVRVAK+EK+ DDV+++
Sbjct: 61  ARALSAADEEIGFSLFCCARPNGDVVIEAREVLGIGEFPVKKLPVRVAKVEKLGDDVMLI 120

Query: 121 SLQLPANDRLQYKAGQYVEFLLRDGKRRSYSMANAPHKDEPMSLHIRHLPGGLFTDQVFS 180
           +LQLPA++RLQY+AGQY+EFLL+DGKRRSYS+ NAPH DE ++LHIRH+PGGLFTD VF+
Sbjct: 121 ALQLPASERLQYRAGQYIEFLLKDGKRRSYSLGNAPHSDEHLTLHIRHMPGGLFTDHVFT 180

Query: 181 TLKERDILRIEGPLGTFFLREDSDKPIILLASGTGFAPIKAIVEQLQHAGSKRPVTLYWG 240
           TLKERDILR EGP G+FFLREDS KP++LLASGTGFAPIKAIVEQ  H  S+RP+TLYWG
Sbjct: 181 TLKERDILRFEGPQGSFFLREDSKKPMVLLASGTGFAPIKAIVEQALHDKSQRPMTLYWG 240

Query: 241 GRRPQDLYLNALCQQWEQELPDFKYVPVVSNAQPEDHWSGRTGFVHRAVMEDFPDLSAHQ 300
           GRRP+DLY++ALC+QW +E+P F YVPV+S+A  +D W GR+GFVH+AVMED P++SA+Q
Sbjct: 241 GRRPKDLYMHALCEQWAREIPHFNYVPVISHATADDQWQGRSGFVHKAVMEDLPNMSAYQ 300

Query: 301 VYACGAPIVVESAQRDFSAQCKLPEGEFYADSFTSEADLAK 341
           VYACG P++VE+AQ +FSA C+LP  EFYAD+FTSEADLA+
Sbjct: 301 VYACGTPVMVEAAQAEFSALCQLPREEFYADAFTSEADLAQ 341


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 853,709
Number of extensions: 37863
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 262
Effective length of database: 910,473
Effective search space: 238543926
Effective search space used: 238543926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)