BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3292.p (257 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 180 8e-47 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 180 9e-47 gi|152979879|ref|YP_001354308.1| sulfonate/nitrate transport sys... 169 1e-43 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 165 3e-42 gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport sys... 165 3e-42 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 180 bits (456), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 93/216 (43%), Positives = 135/216 (62%), Gaps = 6/216 (2%) Query: 2 KLSFNNVAKRFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGTVAG 61 ++SF+ + G + + ++ GE + L+G SGCGKSTLL++ AGL + + G + Sbjct: 15 EMSFST---KKGIFNALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATGGMLLC 71 Query: 62 DDQAIRGPHPERTLMFQENALYPWLTLQQNVALALEFQGVNKQVAAE---QARTWLEKVK 118 ++ I GP PER ++FQ ++L PWLT +NV LA+E + AE + R L V Sbjct: 72 GNREIAGPSPERAVVFQNHSLLPWLTCYENVYLAVERVFSATESKAELKARTRAALALVG 131 Query: 119 LKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRELIRQ 178 L E P+++SGGM+QR +ARA +PK LL+DEPFGALDALTR LQD L +++ Sbjct: 132 LSHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAA 191 Query: 179 QGPTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEF 214 G TVV+VTHDVDEA+ L+DRI + + P+ + E Sbjct: 192 TGSTVVMVTHDVDEAVLLSDRIVMLTNGPSATIGEI 227 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 180 bits (456), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 95/230 (41%), Positives = 135/230 (58%), Gaps = 3/230 (1%) Query: 15 LHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGTVAGDDQAIRGPHPERT 74 + + E I GE V L+G SGCGKSTLL + AG E SSG+ I GP PER Sbjct: 30 VQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSSGSANMYGMPIDGPSPERG 89 Query: 75 LMFQENALYPWLTLQQNVALALEFQGVNKQVAAEQARTWLEKVKLKGFEHYYPHQVSGGM 134 ++FQ+ L+PWLT+++N+ + + K E + + + V L F +YYP Q+SGGM Sbjct: 90 MVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAYYTDMVGLTKFANYYPGQLSGGM 149 Query: 135 RQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRELIRQQGPTVVLVTHDVDEAL 194 +QR A+AR + + LL+DEPFGALDALTR LQ L E+ + TVV VTH V+EA+ Sbjct: 150 KQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLEIWERTKVTVVFVTHAVEEAV 209 Query: 195 FLADRIFVFSPRPAKVLKEFNLVHHEKTHDLS--EFAATRREILGLLGIH 242 L+DR+ V + P ++ ++ L + D++ EF RR+I L H Sbjct: 210 MLSDRVVVMTAGPGRIEEDIKL-DLARPRDITAVEFNEIRRDITQYLTSH 258 >gi|152979879|ref|YP_001354308.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 246 Score = 169 bits (428), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 99/235 (42%), Positives = 139/235 (59%), Gaps = 2/235 (0%) Query: 10 KRFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGTVAGDDQAIRGP 69 K FG+ +V+++ + +A+GE+V+LVG SGCGKSTLL + AGL+K SG + D ++ Sbjct: 12 KNFGERNVLQDVSLTLAAGEIVSLVGKSGCGKSTLLRLIAGLDKHYSGEIFLDGVKLKCV 71 Query: 70 HPERTLMFQENALYPWLTLQQNVALALEFQGVNKQVAAEQARTWLEKVKLKGFEHYYPHQ 129 P+ L+FQE L PWL++ +NV Q ++ A + L +V L P Q Sbjct: 72 TPDIGLIFQEPRLLPWLSVAENVGFNRPDQDRSRANANPHVQALLHEVGLSEAIDSLPKQ 131 Query: 130 VSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRELIRQQGPTVVLVTHD 189 +SGGM QRAA+AR +QP+ LLLDEPF A+DA TRM LQD L L + G V+LVTHD Sbjct: 132 LSGGMAQRAAIARGLFNQPRLLLLDEPFSAVDAFTRMRLQDLLLALAAEHGFAVLLVTHD 191 Query: 190 VDEALFLADRIFVFSPRPAKVLKEFNLVHHEKTHDLSEFAATRREILGLL-GIHA 243 +DEA +L+DR+ + NL H + + A R +IL +L IHA Sbjct: 192 IDEAAYLSDRVLTMGQGEIIEDTKVNLPRPRNRHSV-DLATARDDILKVLEEIHA 245 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 165 bits (417), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 92/233 (39%), Positives = 135/233 (57%), Gaps = 4/233 (1%) Query: 3 LSFNNVAKRFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGTVAGD 62 L N+ +RFGD V++ + I +GE L+GPSGCGK+TLL M AG + P +G + D Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILLD 63 Query: 63 DQAIRGPHPERT---LMFQENALYPWLTLQQNVALALEFQGVNKQVAAEQARTWLEKVKL 119 + G PE+ +FQ AL+P +T+ N+A LE K ++ LE V+L Sbjct: 64 GVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALEDVRL 123 Query: 120 KGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRELIRQQ 179 GF YPH++SGG RQR ++ARA +++PK LLLDEP ALDA R +Q L L ++ Sbjct: 124 TGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEV 183 Query: 180 GPTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNLVH-HEKTHDLSEFAAT 231 G T + VTHD EAL L+ RI V + + L E ++ + ++ +++F T Sbjct: 184 GITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFIGT 236 >gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 294 Score = 165 bits (417), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 88/205 (42%), Positives = 127/205 (61%), Gaps = 8/205 (3%) Query: 24 EIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGTVAGDDQAIRGPHPERTLMFQE-NAL 82 ++ + L+GPSGCGKSTLL AG P G + D +A+ P P+R ++FQE + L Sbjct: 65 DVHQADRFVLLGPSGCGKSTLLKAVAGFILPVEGEIRLDGKAVTAPGPDRIVVFQEFDQL 124 Query: 83 YPWLTLQQNVALAL-EFQGVNKQVAAEQARTWLEKVKLKGFEHYYPHQVSGGMRQRAALA 141 PW T++QNV L + + ++ A E+A +L KV L F +PHQ+SGGM+QR A+A Sbjct: 125 SPWKTVKQNVIFPLLASRTLGRKEAEERALHYLAKVGLSKFSDVHPHQLSGGMKQRVAIA 184 Query: 142 RAFISQPKALLLDEPFGALDALTRMTLQDALRELIRQQGPTVVLVTHDVDEALFLADRIF 201 RA QP+ LL+DEPF ALDALTR +Q+ L +L + T++ VTH ++EAL + +RI Sbjct: 185 RALAMQPRVLLMDEPFAALDALTRRKMQEELLQLWDEVHFTLLFVTHSIEEALVVGNRIA 244 Query: 202 VFSPRPAKVLKEFNLVHHEKTHDLS 226 + SP P ++ E N +HD S Sbjct: 245 LLSPHPGRMRAEIN------SHDFS 263 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 594,923 Number of extensions: 23857 Number of successful extensions: 263 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 185 Number of HSP's successfully gapped: 62 Length of query: 257 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 176 Effective length of database: 921,564 Effective search space: 162195264 Effective search space used: 162195264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)