BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3291.p
         (333 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982705|ref|YP_001355225.1| ABC-type transport systems, per...    76   2e-15

>gi|152982705|ref|YP_001355225.1| ABC-type transport systems,
           periplasmic component [Janthinobacterium sp. Marseille]
          Length = 332

 Score = 76.3 bits (186), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 118/259 (45%), Gaps = 15/259 (5%)

Query: 11  ITAAALAFSSNALALEKFKIGYLRVMDDAQAMAAYEAGLYKKYGLDVELIEFKSGTDLVK 70
           I + ALA   +A+     ++GYL ++  AQ   AYE           +L++F+SG  LV+
Sbjct: 5   IASVALALGLSAVHAAPLEVGYLPIIPAAQLFIAYEQNTLPPEVRAAKLVQFQSGPALVQ 64

Query: 71  AIVGGQLDSGVFGFSNAVAWASKGADLKVVGGAQLGYHALVARDD-----------SGIN 119
           A++ GQLD    G   A+  ++KGAD+KVV    +   + VA  +           +   
Sbjct: 65  ALLAGQLDIAYVGIGPALVASAKGADIKVVASNIVEQVSFVAMGNLAPYFASGDASTAFA 124

Query: 120 KVADLKGK--TLASQAEGSTADTVLKGVVLRDAGLKPDDVNVMGVSPQVAVQSLVGKRVD 177
           + A   G+   +AS   G+  +  L+  + + A + P    ++        Q+L+   +D
Sbjct: 125 RFAKDNGRQPIIASYPRGAVPEAALQYWLRKRAKVDPSSFKLIYQGEAQIQQALLTGAID 184

Query: 178 AAFLFEPQARIAQLIAPVKQVYEIG-EVWPFPCMVVITSGETLKKKRDAVWKSL-DAQRD 235
            A + EP        AP  +V   G E++P     V+   E L +++  + KSL  A   
Sbjct: 185 GAAILEPTVTTVLTKAPKARVVARGSELFPHQPGAVLLVREKLIREQPELVKSLVKAHIA 244

Query: 236 AITLLQKKPAEASKLIAGY 254
           A  LL+  PA+A+  +  Y
Sbjct: 245 ATKLLETNPAQAAPFVQKY 263


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 716,034
Number of extensions: 29816
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 249
Effective length of database: 910,473
Effective search space: 226707777
Effective search space used: 226707777
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)