BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3290.p (257 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bica... 92 2e-20 gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica... 84 8e-18 gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport syst... 77 7e-16 gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport sys... 71 7e-14 gi|152981719|ref|YP_001355226.1| ABC-type nitrate/sulfonate/bica... 55 3e-09 >gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 296 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 2/191 (1%) Query: 65 SLYRLGLGYGSALVLGIGFGLIGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILMGFGN 124 S+ R+ GY VL I FGL + + L++IPS+AWVPL L+ G Sbjct: 100 SVARVFSGYAIGAVLAILFGLFVGLSKHAEAFFEPTFQALRAIPSLAWVPLLLLWFGIDE 159 Query: 125 LPIVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPELITG 184 P + ++AI AFFP L +++ +V + + + G S ++ RR+ LPA +P L TG Sbjct: 160 TPKITLIAIGAFFPIYLGLVSGIRNVDRKLIELGEIYGLSAPALARRIVLPAALPSLFTG 219 Query: 185 AQLAFGNAWRALISAEMLVGFGKGLGRTLAYSGETADMIGVMANILTIAILAALIDQVIL 244 + AW L++AE L+ KG+G L ET+ V+A I +AIL L D +L Sbjct: 220 LRNGLSLAWMFLVAAE-LIAATKGIGYLLTDGRETSRPDVVLAAIFLLAILGKLTDG-LL 277 Query: 245 ENLKHRLLKYQ 255 + L+ R L + Sbjct: 278 KWLETRKLAWS 288 >gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 276 Score = 84.0 bits (206), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 2/207 (0%) Query: 49 LWEEVQSSNFRAALFGSLYRLGLGYGSALVLGIGFGLIGAVLFFFREVLKSAIVILQSIP 108 ++++ S L+ S+ R+ G+ +A ++GI GL+ + R++L + +L+ +P Sbjct: 67 IYDDAFSETLPLHLWKSVTRVYGGFFAAALVGIPLGLLIGRIKVIRDLLDPTLQLLRPVP 126 Query: 109 SIAWVPLFLILMGFGNLPIVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSM 168 AW+PL +I G G + +V + AF+P + ++V AA ++G + S+ Sbjct: 127 VTAWLPLSMIFFGIGPNAAIFLVFLGAFYPIVFNTTFGVKAVDNRLFEAALMLGCNGSSL 186 Query: 169 LRRVYLPAVMPELITGAQLAFGNAWRALISAEMLVGFGKGLGRTLAYSGETADMIGVMAN 228 R+V LPA MP ++ G +L G AW ++ EM G +GLG + + V+A Sbjct: 187 FRQVVLPAAMPSILNGLRLGHGFAWILIVVGEM-TGVPEGLGAVIMDGRMLSRTDLVIAG 245 Query: 229 ILTIAILAALIDQVILENLKHRLLKYQ 255 ++ I I+ D+ IL + + LLK+ Sbjct: 246 MVVIGIVGYSTDR-ILVAINNYLLKWS 271 >gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] Length = 309 Score = 77.4 bits (189), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 84/149 (56%), Gaps = 1/149 (0%) Query: 62 LFGSLYRLGLGYGSALVLGIGFGLIGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILMG 121 + SL R+G+G+G A ++GI G + F + I +L+ + +AW+P+ L++ Sbjct: 115 ILASLKRVGMGFGMAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVFK 174 Query: 122 FGNLPIVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPEL 181 + + + I + +P ++ + V Q +++ A+V+ S ++ ++ P+V+P + Sbjct: 175 AADPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVAKVLKLSEWKIVTKILFPSVLPYM 234 Query: 182 ITGAQLAFGNAWRALISAEMLVGFGKGLG 210 +TG +LA G AW +++AEML G G G+G Sbjct: 235 LTGVRLAIGTAWLVIVAAEMLTG-GVGIG 262 >gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 276 Score = 70.9 bits (172), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 7/256 (2%) Query: 3 SQRRVTGVRKKLAMLLAIAFILLMWQIAA---WSLPSFLMPGVPEVAVRLWEEVQSSNFR 59 S R +G++K + ++ + ++ +WQIA+ W L S ++P VA WE S Sbjct: 20 STWRASGLKKLVPWIVPV-LLISVWQIASQLGW-LSSRILPEPFAVAKAAWELALSGELW 77 Query: 60 AALFGSLYRLGLGYGSALVLGIGFGLIGAVLFFFREVLKSAIVILQSIPSIAWVPLFLIL 119 + SL+R + LG+ GL+ +L + + ++++IP++A +PL ++ Sbjct: 78 THVKVSLWRATTSFAVGGGLGLLLGLLTGTFKTAETLLDTTLQMIRNIPALALIPLVILW 137 Query: 120 MGFGNLPIVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMP 179 G + +VA+ FFP L+ + SV + + A+ G S S+ R V LP +P Sbjct: 138 FGIEETSKIFLVAVGVFFPVYLNTFHGIRSVDKGLIEMAKSYGLSGWSLYRDVILPGALP 197 Query: 180 ELITGAQLAFGNAWRALISAEMLVGFGKGLGRTLAYSGETADMIGVMANILTIAILAALI 239 ++ G + + G W LI AE + G+G + E V+ IL A+L L Sbjct: 198 SILVGVRFSLGLVWVLLIVAET-ISAQSGIGYMTMNAREFLQTDVVLVGILLYALLGKLA 256 Query: 240 DQVILENLKHRLLKYQ 255 D V+ L+ L++ Sbjct: 257 D-VVSRTLEGYWLRWH 271 >gi|152981719|ref|YP_001355226.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 255 Score = 55.5 bits (132), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 10/192 (5%) Query: 67 YRLGLGYGSALVLGIGFGLIGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILMGFGNLP 126 Y GLG G+ + GI FGL A + F + I IL+ IP +AWV + + Sbjct: 70 YFWGLGLGT--LFGIAFGLAAATIRPFELLQAYLIRILRPIPPLAWVVFAIAWFKVSHAG 127 Query: 127 IVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRR---VYLPAVMPELIT 183 V++I F+ + +A ++ AR G S RR + LPA+ P + Sbjct: 128 AAFVISIGVFWINYYATASAVRNIDPRFYELARSFGQG--SYWRRAVSITLPAIAPGTLA 185 Query: 184 GAQLAFGNAWRALISAEMLVGFGKGLGRTLAYSGETADMIGVMANILTIAILAALIDQVI 243 G + G AW LI+AE+L G G+G+ + + V+ +L I+++ A+ D +I Sbjct: 186 GIRTGIGQAWMTLIAAELL-GV-PGMGQEMNAAAGVGAYEAVVIYMLAISLVYAISD-LI 242 Query: 244 LENLKHRLLKYQ 255 ++ R+L ++ Sbjct: 243 YVLIEKRVLSWR 254 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.141 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 448,491 Number of extensions: 14730 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 7 Length of query: 257 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 176 Effective length of database: 921,564 Effective search space: 162195264 Effective search space used: 162195264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)