BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3287.p (340 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [... 128 6e-31 gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 123 2e-29 gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [... 122 3e-29 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 121 6e-29 gi|152982523|ref|YP_001355121.1| diguanylate cyclase [Janthinoba... 119 2e-28 >gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [Janthinobacterium sp. Marseille] Length = 528 Score = 128 bits (321), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 110/179 (61%), Gaps = 12/179 (6%) Query: 148 AEQRIEHLN---EKLALLAVTDKLTGLANRMKLDETLDSEIARAHRYGTKLSLILLDVDH 204 AE RI +L E+++ L D+LTG NR LD+ L+ EIARA R + L + +LD+D Sbjct: 349 AEARIHNLELQLEQMSELVREDQLTGSLNRRGLDDVLEREIARADRRASPLCIAMLDLDD 408 Query: 205 FKEVNDKFGHSAGDAVLVSIAEILRTNVRATDIVGRWGGEEFLLILPQCDIEAS----SR 260 FK++NDK+GH AGD L+ + +++ +R D++ R+GGEEFL++LP +E + +R Sbjct: 409 FKKINDKYGHMAGDEALIHLVRVIKDTLRTMDVIARFGGEEFLIVLPDTPLEEAILTITR 468 Query: 261 MAEKL--RLIVERHSFALIDKRTCSFGVAAYQFGHDGTTLLSLADSALYRAKKNGRNRV 317 + +L ++ + H+ L+ T S GVA + D ++ AD ALY AKK G+NRV Sbjct: 469 LQRELTKQIFMHNHTRLLM---TFSAGVALRKEREDQAAMVKRADIALYEAKKAGKNRV 524 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 123 bits (308), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 19/220 (8%) Query: 120 WFIMRIAPVLEME---SFFVISHSVITGRKLAEQRIEHLNEKLALLAVTDKLTGLANRMK 176 W + IAPV + E + FV + S IT K E + L A D LTGL NR Sbjct: 437 WNDLYIAPVKDDEGKTTHFVAAMSDITPMKQYETTLHRL-------ASHDVLTGLPNRAL 489 Query: 177 LDETLDSEIARAHRYGTKLSLILLDVDHFKEVNDKFGHSAGDAVLVSIAEILRTNVRATD 236 L + L++ IA + R G + ++L+D+D FK VND GH AGD +L I++ L+ +VR +D Sbjct: 490 LQDRLENAIAYSARNGHAVWVVLVDLDRFKFVNDTMGHQAGDVLLKIISDRLQASVRESD 549 Query: 237 IVGRWGGEEFLLILPQCDIEASSRMAEKLRLIVERHSFALIDKR-----TCSFGVAAY-Q 290 V R GG+EF+L+LP+C S ++ ++ I+E L + +CS G+A Y Sbjct: 550 TVARLGGDEFVLVLPECGDGPSGYSSDVIQRIMEAVVKPLTIQGSEFFLSCSMGIAVYPN 609 Query: 291 FGHDGTTLLSLADSALYRAKKNGRNRVEIAIEPEPSVNSR 330 G D TTLL+ AD A+YR+K+ GRN + P++N + Sbjct: 610 DGADPTTLLAHADVAMYRSKELGRNNFQFYT---PAMNDQ 646 >gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 122 bits (306), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 69/172 (40%), Positives = 102/172 (59%), Gaps = 10/172 (5%) Query: 156 NEKLALLAVTDKLTGLANRMKLDETLDSEIARAHRYGTKLSLILLDVDHFKEVNDKFGHS 215 NE+L + +TD LTG+ NR ++ L E+ R R+G LS + +D+DHFK+VND FGH Sbjct: 177 NERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYALSGMYIDLDHFKKVNDNFGHQ 236 Query: 216 AGDAVLVSIAEILRTNVRATDIVGRWGGEEFLLILPQCDIEASSRMAEKLRLIVERHSFA 275 GD VL +A ++ +R +D +GR+GGEEF+++L ++A+ +AE++R V Sbjct: 237 GGDEVLCEVANRIKAELRLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVSERPIV 296 Query: 276 LID----KRTCSFGVAAYQFG--HDGTT----LLSLADSALYRAKKNGRNRV 317 L + T S GVA+ D LL+ AD ALY+AKK GRN+V Sbjct: 297 LSSGEELRATVSIGVASLNTADRQDSAAVAQQLLAKADLALYQAKKEGRNKV 348 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 121 bits (304), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 115/213 (53%), Gaps = 26/213 (12%) Query: 120 WFIMRIAPVLEME---SFFVISHSVITGRKLAEQRIEHLNEKLALLAVTDKLTGLANRMK 176 W + IAPV + S FV++ IT K E +E + D LTGLANR Sbjct: 480 WSDLYIAPVKDDTGEVSHFVVALYDITATKRYESELEFQTNR-------DALTGLANRSL 532 Query: 177 LDETLDSEIARAHRYGTKLSLILLDVDHFKEVNDKFGHSAGDAVLVSIAEILRTNVRATD 236 L + L I+ AHRY + + +D+D FK VND GH AGD +L +IAE L+ VR TD Sbjct: 533 LRDRLSQAISYAHRYNHPIWIAFVDLDRFKFVNDTLGHQAGDLLLKAIAERLQHAVRDTD 592 Query: 237 IVGRWGGEEFLLILPQ-CDIEASSRMAEKLR------LIVERHSFALIDKRTCSFGVAAY 289 V R GG+EF+LILP+ D S+ + +++ L +E H F + + S GVA Y Sbjct: 593 TVSRMGGDEFVLILPERVDAGLSTGIVQRIMDGIAQPLTIEGHEFFI----SSSIGVAVY 648 Query: 290 QFGHDGTT---LLSLADSALYRAKKNGRNRVEI 319 +DG T L+ AD A+YRAK+ GRN + Sbjct: 649 P--NDGVTPEELIKHADIAMYRAKETGRNNFQF 679 >gi|152982523|ref|YP_001355121.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 408 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/156 (40%), Positives = 94/156 (60%), Gaps = 2/156 (1%) Query: 166 DKLTGLANRMKLDETLDSEIARAHRYGTKLSLILLDVDHFKEVNDKFGHSAGDAVLVSIA 225 D L G NR + L+ + A G L L ++D+DHFK VND+ GH GD VL + A Sbjct: 243 DVLLGCFNRRYIVAALEQQKRMADESGAPLCLAVIDLDHFKRVNDEAGHLGGDEVLRTFA 302 Query: 226 EILRTNVRATDIVGRWGGEEFLLILPQCDIEASSRMAEKLRLIVERHSF--ALIDKRTCS 283 + +NVR DI GR+GGEEFLL+LP+ + A+ ++E++R +E+H + L ++ T S Sbjct: 303 RVAESNVRKHDIFGRYGGEEFLLVLPETPLSAALNISERIRTQIEQHDWQGKLRNRVTVS 362 Query: 284 FGVAAYQFGHDGTTLLSLADSALYRAKKNGRNRVEI 319 G+ Y G L S D+A+Y AK++GRN+V + Sbjct: 363 IGLTQYIAGESVLDLFSRTDTAMYMAKQSGRNQVVV 398 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 743,605 Number of extensions: 28955 Number of successful extensions: 122 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 29 Length of query: 340 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 256 Effective length of database: 910,473 Effective search space: 233081088 Effective search space used: 233081088 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)