BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3286.p
         (560 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979942|ref|YP_001353701.1| antiporter CPA1 family monovale...   397   e-111

>gi|152979942|ref|YP_001353701.1| antiporter CPA1 family monovalent
           cation/proton antiporter [Janthinobacterium sp.
           Marseille]
          Length = 543

 Score =  397 bits (1020), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 263/567 (46%), Positives = 348/567 (61%), Gaps = 52/567 (9%)

Query: 1   MEIVFTVLILLLAVAVSGVVARLAPFKLPLPLFQIALGAVLALPMFGLRISFDPELFLLL 60
           M  V  +LILLLAV  S  VARL P K+PLPL QIA G VL+   FG+ +  DPE F L 
Sbjct: 1   MHTVTIILILLLAVVASAFVARLLPIKVPLPLVQIATGIVLSYG-FGISVPLDPEFFFLF 59

Query: 61  FIPPLLFTDGWRMPKREFFRLARPILALALGLVMFTVVGVGYFIHWMIPVISLPSAFALA 120
           FIPPLLF DGWR+PK  FFR ARPI+ LA+GLV+FTVVG+GYFIHWMIP I L +AFALA
Sbjct: 60  FIPPLLFLDGWRIPKSAFFRDARPIVTLAIGLVLFTVVGMGYFIHWMIPAIPLAAAFALA 119

Query: 121 AVLSPTDAVAVSSIVGKGRLPASMQHVLEGEALMNDASGLVAFKFAIAAVITGTFSLLDA 180
           A+LSPTD VAVS+I  +  +P+ + H+LEGE+L+NDASGLV F+FA+AAVITG+FSLLDA
Sbjct: 120 AILSPTDPVAVSAIASQSPIPSRLMHILEGESLLNDASGLVCFRFAVAAVITGSFSLLDA 179

Query: 181 SISFVLIAAGGIAVGLIVAWGFGLIRRKIIEWAGDEPGIQVVLLLLIPFTAYIFAEHFGL 240
           S+ F+  A GG+ VG+ VAW  G++ R ++   G++PG Q+++ LL+PF AY+ AEH G 
Sbjct: 180 SLEFLQAAGGGLLVGIAVAWLIGILNRWLVAAVGEDPGTQILISLLVPFAAYLGAEHIGS 239

Query: 241 SGILAAVAGGMLMPYLETAGGESAATRLQGRSILTMLEFVFNGMSFLLLGLQLPGIVS-L 299
           SGILAA A G+ M Y +  G   AATR+Q R++   ++   NG+ F++LG QL   V  L
Sbjct: 240 SGILAAAAAGITMHYADLVGRRLAATRMQRRAVWDTIQMALNGVIFVILGAQLRATVEGL 299

Query: 300 AHVDAQMAGNVPEWHLFVYILAITVALIVLRFVWVWVNLRMRRFASALRGQSGRNRKFDL 359
             + ++M G    W L  Y+LAIT  L VLRF+WVW +L+   F    R +     K   
Sbjct: 300 PGIASEM-GLSTAWWLAFYVLAITAVLAVLRFLWVWGSLKFTVFKGK-RNEDEEIVKPPF 357

Query: 360 RLISITALSGVRGAITLAGVMSIPLLLKEHTPFPARDLLIFLATGVIICSLLFGSFLLPW 419
           +L+ +TA +GVRGAITLAG++++P LL     FPARDLLIFLA GVI+ SLL  S  LP 
Sbjct: 358 KLLLVTAFAGVRGAITLAGILTLPFLLPNGAEFPARDLLIFLAKGVILLSLLTASIALPL 417

Query: 420 LLKDLQLDAE--------------------VKRRRAEEMMARLRLSEAAVRSIETAQERI 459
           L + L+   E                       +  + M A    SEAA R  E  Q R+
Sbjct: 418 LTRGLEFSPEPVIGAGEGQARAAAAEAAIRRIEQLTQTMSANDAYSEAAARITELYQRRL 477

Query: 460 GENLDESDLALLMEVSGSLLATYRMRMNAESDSEETQRAANRFKQFERELRLEAVRAERL 519
               +E D A             R+++ AE+               ER LRLEA+RAER 
Sbjct: 478 DYG-NEGDEA------------ARIQLQAEA---------------ERSLRLEAIRAERD 509

Query: 520 EVHYLRAEQRINDETFLMLINQIDMAE 546
           E+  +    +++D     L+ ++D+ E
Sbjct: 510 ELFQMWLNDKLDDSVHQHLLRELDLIE 536


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.142    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,065,517
Number of extensions: 40596
Number of successful extensions: 219
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 472
Effective length of database: 895,685
Effective search space: 422763320
Effective search space used: 422763320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)