BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3285.p (414 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982698|ref|YP_001352731.1| major facilitator transporter [... 128 7e-31 gi|152980838|ref|YP_001354006.1| major facilitator transporter [... 126 2e-30 gi|152980800|ref|YP_001354171.1| major facilitator superfamily s... 74 1e-14 gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Jan... 72 9e-14 >gi|152982698|ref|YP_001352731.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 460 Score = 128 bits (321), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 116/446 (26%), Positives = 204/446 (45%), Gaps = 56/446 (12%) Query: 7 TTSERRTLTATFTGYAVDGFDYMIYTFLIPTLLAAWSMSKAEAGYIATGALLTSAVGGWA 66 T +R T + D D I TF++ ++ A ++++ +AG +A+ + L +G Sbjct: 23 TRYQRSLFGIIATAWFFDSMDLGIMTFVLGSIKAEFALTTTQAGLLASSSFLGMFLGAAI 82 Query: 67 AGVLADRYGRVRVLQWTVLWFALFTFLSGFTNSFGQLFFTRAMQGFGMGGEWAVGSVLIA 126 AG+LAD++GR V QW+++++ + GF L R + GFGMG E+ +G +++ Sbjct: 83 AGMLADKFGRKPVFQWSMIFWGAGSLACGFATDVTWLMVFRVVLGFGMGMEFPIGLSMVS 142 Query: 127 ETISARHRGKASGLVQSSWAVGWAASALAFWGIYAVLP-PEMAWKVLFWIGILPALLTLY 185 E + A+ RGK +++ W +G+ A+ GI A L P + W+ +F +PA+ Sbjct: 143 EIVPAKSRGKYVAILEGFWPLGFIAA-----GILAYLTLPLIGWRGIFIALSIPAVFVFI 197 Query: 186 IRRTLHEPEIYLATQAR----------------------------------LRQSGQRGN 211 +RR + E +L R ++ +R Sbjct: 198 VRRYVPESPRWLEEVGRDAEADAVTTKIEKNVIKANGGKPLPTPAPPINEMPKKQDKRAL 257 Query: 212 FLRIFHRDLL-RTTLLASLLATGMQGAYYSVTTWLPTFLKTERHLSVLGTSTYLLVLIGG 270 F ++H RT +L +L + G YY +TTWL L+ + V + Y + + Sbjct: 258 FAELWHGVYAKRTVMLWALWFFALLG-YYGLTTWLGALLQQAGY-EVTKSVMYTVYISLA 315 Query: 271 SFCGYLTSAWLSDTIGRRRCFMFFAVMGIVLVLSYTQMVITD---AWMLALGFVLGFFLS 327 G++ SAWL + GR+ + V Y Q+ A ++ G + FFL Sbjct: 316 GIPGFIFSAWLLEKWGRKPTCVLMLVGSACAAYVYGQVATAQAPVAQLIGAGLCMQFFLF 375 Query: 328 GIFAGMGAYLSELFPSDVRGSGQGFCYNVGRALGAICPALVGYLGNSLPLGQ-----TIG 382 G+++ + AY EL+P+ R +G GF ++GR + P VG + LP+ T+G Sbjct: 376 GMWSVLYAYTPELYPTRSRATGSGFASSIGRLGSLLGPFAVGVI---LPMTGHTGVFTLG 432 Query: 383 WVAAACYALVILACLALPETRGKELE 408 ++ ALV++ ET+G+ LE Sbjct: 433 AISFGIAALVVIVMGT--ETKGRSLE 456 >gi|152980838|ref|YP_001354006.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 462 Score = 126 bits (317), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 106/422 (25%), Positives = 198/422 (46%), Gaps = 45/422 (10%) Query: 24 DGFDYMIYTFLIPTLLAAWSMSKAEAGYIATGALLTSAVGGWAAGVLADRYGRVRVLQWT 83 D D + +L+ ++ + ++ A+AG + + + + A+G ++G+LAD++GR + Q + Sbjct: 40 DNLDLAMMAYLLGSIKTEFGLTTAQAGMLGSASFVGMALGAVSSGMLADKFGRKPIFQIS 99 Query: 84 VLWFALFTFLSGFTNSFGQLFFTRAMQGFGMGGEWAVGSVLIAETISARHRGKASGLVQS 143 ++ + + ++L N L R + G GMG E + L++E I A+ RGK L+ Sbjct: 100 MIIWGVASYLCSTANDPVSLAIYRVLLGIGMGMELPLAQTLLSEFIPAKRRGKYLALMDG 159 Query: 144 SWAVGWAASALAFWGIYAVLPPEMAWKVLFWIGILPALLTLYIRRTLHEPEIYLATQARL 203 +W + + + L + + A +W+ +F +G +PA+ IRR + E +L ++ R Sbjct: 160 NWPIAFICAGLMSYYVLA----SYSWRTMFLLGAIPAVFLFVIRRYVPESPRWLESKGRH 215 Query: 204 RQS-----GQRGNFLRIFHRD----LLRTTLLASLLATGMQG------------------ 236 ++ G G +I D +++T ++ A G++ Sbjct: 216 AEASNIVDGIEGEVKKILKVDSLPPIVQTAMMRDQEAFGIKVLWSPVYRRRTLTVWGLWF 275 Query: 237 ----AYYSVTTWLPTFLKTERHLSVLGTSTYLLVLIGGSFCGYLTSAWLSDTIGRRRCFM 292 +Y + TW+ L+ + L V + Y + + G G+L +AW+ + GR+ + Sbjct: 276 FALLGFYGLNTWIGALLQ-QSGLEVTKSVLYTVYIACGGIPGFLWAAWVVERWGRKPACV 334 Query: 293 FFAVMGIVLVLSYTQMVITDAWMLAL---GFVLGFFLSGIFAGMGAYLSELFPSDVRGSG 349 + G V+V Y + + +AL G ++ FF+ G++A + Y EL+P+ R SG Sbjct: 335 STLLGGAVMVFIYGWVASSAHTFIALVSAGAMMQFFMFGMWAVLYTYTPELYPTRARASG 394 Query: 350 QGFCYNVGRALGAICPALVGYLGNSLPLGQTIG--WVAAACYALVILACLALP-ETRGKE 406 G VGR + P +VG + LPL IG V A+C+ + ETRG Sbjct: 395 CGMASTVGRLGSLLGPTIVGVI---LPLVGQIGVFTVGASCFVIAAFIVYRFGIETRGLS 451 Query: 407 LE 408 LE Sbjct: 452 LE 453 >gi|152980800|ref|YP_001354171.1| major facilitator superfamily sugar transporter [Janthinobacterium sp. Marseille] Length = 544 Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 82/306 (26%), Positives = 129/306 (42%), Gaps = 28/306 (9%) Query: 6 TTTSERRTLTATFTGYAVDGFDYMIY----TFLIPTLLAAWSMSKAEAGYIATGA--LLT 59 T ER+ + A+ G + +D+ IY F+ L + + A + A + Sbjct: 15 TAKEERQVVLASTLGTIFEWYDFFIYGSLAIFMSSVLFPPDNPTAALLASLGALAAGFVI 74 Query: 60 SAVGGWAAGVLADRYGRVRVLQWTVLWFALFTFLSGFTNSFGQ--------LFFTRAMQG 111 +G G L DR GR T++ T L GF S+ L R +QG Sbjct: 75 RPIGAVLFGYLGDRLGRKHTFLLTIIMMGGSTALIGFLPSYASVGHAAWISLVVLRLVQG 134 Query: 112 FGMGGEWAVGSVLIAETISARHRGKASGLVQSSWAVGWAASALAFWGIYAVLP----PEM 167 +GGE+ + +AE RG +G +Q + ++G S G A + E Sbjct: 135 LAVGGEYGGAVIYVAEHSRPSRRGLLTGWIQITSSMGLILSIAVILGTQATMDMASFKEW 194 Query: 168 AWKVLFWIGILPALLTLYIRRTLHEPEIY--LATQARLRQSGQRGNFLRIFHRDLLRTTL 225 W+V F I I + ++Y+R LHE ++ L Q RL ++ R F F L+ L Sbjct: 195 GWRVPFIISIAMLIFSVYVRAKLHESPVFTRLKAQGRLSKNPVRDTF---FKWPSLKMIL 251 Query: 226 LASLLATGMQGA-YYSVTTWLPTFLKTERHLSVLGTSTYLLV--LIGGSFCGYLTSAWLS 282 LA T QGA Y++ ++ FL+ L T + + LIG ++ WLS Sbjct: 252 LALFGVTAGQGATYFTGQFYVMIFLQQAVMLDQRTVYTLICIGFLIGAP--AFVFFGWLS 309 Query: 283 DTIGRR 288 D +GR+ Sbjct: 310 DRLGRK 315 >gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 439 Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 98/397 (24%), Positives = 166/397 (41%), Gaps = 43/397 (10%) Query: 11 RRTLTATFTGYAVDGFDYMIY---------TFLIPTLLAAWSMSKAEAGYIATGALLTSA 61 R + A+ G ++ +D++IY P + A Y A G L Sbjct: 22 RSVVFASAIGTIIEWYDFLIYGMAAALVFNKLFFPNIDPLLGTLAALGSY-AVG-FLARP 79 Query: 62 VGGWAAGVLADRYGRVRVLQWTVLWFALFTFLSGFTNSFGQ--------LFFTRAMQGFG 113 +GG G DR GR +L T+ + TFL G ++GQ L R +QG G Sbjct: 80 LGGAIFGHYGDRIGRKSILMITLALMGIGTFLIGLLPTYGQIGIWAPILLITLRIIQGIG 139 Query: 114 MGGEWAVGSVLIAETISARHRGKASGLVQSSWAVGWAASALAFWGIYAVLPPEM-----A 168 +GGEW +V++ E RG LVQ + +G + L F + + PE Sbjct: 140 LGGEWGGAAVMVLEHSPKNRRGFYGSLVQVGFPLGLVIATLVFSFVSKM--PEADILSWG 197 Query: 169 WKVLFWIGILPALLTLYIRRTLHEPEIYLATQARLRQSGQRGNFLRIFHRDLLRTTLLAS 228 W++ F + + ++ ++IR+ + E ++ ++R++ + + + + RT +A Sbjct: 198 WRIPFLLSAVLIIVGIFIRKNVEESPVF--EDMKMRKALSKSPVMDVILKH-PRTFFIAI 254 Query: 229 LLATGMQGAYYSVTTWLPTFLKTERHLSVLGTSTYLLVLIGGSFCGYLTSA---WLSDTI 285 L Y +T ++ + T L S L ++ + +T +LSD I Sbjct: 255 GLKISEVSWVYMLTVFMVVYATTTLGLP---KSLILEAILIAAMVEIVTIPLFGYLSDVI 311 Query: 286 GRRRCFMFFAVMGIVLVLS---YTQMVITDAWMLALGFVLGFFLSGIFAGMGAYLSELFP 342 GRR + A+ I + +M +A +L + + +FA Y ELF Sbjct: 312 GRRPLYFIGALFTIAFAFPLFLFMEMRTPEAVILTVVVAMSMGHGLMFAPEATYFPELFG 371 Query: 343 SDVRGSGQGFCYNVGRALGA-----ICPALVGYLGNS 374 ++VR SG F + V A+G I AL GYLG + Sbjct: 372 ANVRYSGASFGFQVAAAIGGGLSPIIATALAGYLGGT 408 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.139 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,006,254 Number of extensions: 44601 Number of successful extensions: 270 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 251 Number of HSP's successfully gapped: 11 Length of query: 414 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 328 Effective length of database: 903,079 Effective search space: 296209912 Effective search space used: 296209912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)