BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3283.p (301 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 88 8e-19 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 74 8e-15 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 72 5e-14 gi|152981638|ref|YP_001353293.1| LysR family transcriptional reg... 72 6e-14 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 68 8e-13 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 87.8 bits (216), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 149/303 (49%), Gaps = 17/303 (5%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 ++LR + F A +T+AA+++ I Q +S +I +LE+ELGV L R + LT + Sbjct: 4 IDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTES 63 Query: 61 GQRF---QRLAVKLLDMQRQIRQELGGNSAGPLLLRIGSIES-VVHSWLPAWLQEIRSRY 116 GQ RL ++ ++ + + + +G L +G ES +H ++PA ++ R + Sbjct: 64 GQALLIDARLILEQVNTTIEGVRRISLGESG--RLAVGFTESAALHPFIPAVIRAFRQKS 121 Query: 117 PDFALELTVETSPVLTEQIRRGALDLVFT-STVGSDTAVRSRLMTPMDMVF---VGHRER 172 P + + + L E +R LD+ F S +GS ++ M +M+ + HR Sbjct: 122 PGVIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLA 181 Query: 173 FGTRVHTLDELAAHDLITFQRGSQP--HQGLLQLCQEWGVLNPRV--HAISSISAMVQLV 228 + L LA D I +R S P + ++ C+ G +PRV A ++S + LV Sbjct: 182 QRRKSLPLTALAEDDFILNRRPSGPGLYDSVIAACRAAG-FSPRVVQEAKKNLSTL-SLV 239 Query: 229 EGGFGVATLPRASVRDLTRRLPLRILRCEAPLAALQIHASYREDPSSSLAELVLDSALDH 288 G GV+ +P AS+R + + + + +AP +H +YR++P S AE ++ A Sbjct: 240 AAGLGVSIVP-ASMRHVQLKEVVYLKLEQAPDLRAPLHLAYRDEPQSGAAERMIIEARKL 298 Query: 289 ARR 291 A+R Sbjct: 299 AQR 301 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 74.3 bits (181), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 89/194 (45%), Gaps = 7/194 (3%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 M LR + F AA +S TRA+E LHITQ T+S +I +E+ELG+ L DR + +LT A Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 61 GQRFQRLAVKLL---DMQRQIRQELGGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYP 117 G+ FQ A + L D EL G + + S H LP L + YP Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFH--LPPILADFNKVYP 118 Query: 118 DFALELTVETSPVLTEQIRRGAL--DLVFTSTVGSDTAVRSRLMTPMDMVFVGHRERFGT 175 + + S + E++ G L + + + V P+ +V H G+ Sbjct: 119 GIKITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHPLVGS 178 Query: 176 RVHTLDELAAHDLI 189 TL+EL H+L+ Sbjct: 179 AGITLNELNEHELV 192 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 71.6 bits (174), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 103/240 (42%), Gaps = 11/240 (4%) Query: 16 KSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVAGQRFQRLAVKLLDMQ 75 K AAE + Q T+S I LE+ELGV L +R + +T G + A ++L+ Sbjct: 32 KHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPLGAQIVAQAERVLEQT 91 Query: 76 RQIRQELGGNSAGPLL--LRIGSIESVVHSWLPAWLQEIRSRYPDFALELTVETSPVLTE 133 I+ E+ + PL+ R+G I ++ LP ++ I R P L L + L E Sbjct: 92 AAIK-EIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQMPLVLQENFTVKLLE 150 Query: 134 QIRRGALDLVFTSTVGSDTA--VRSRLMTPMDMVFVGHRERFGTRVHTLDELAAHDLITF 191 +R+G LD + D V+ P + H + + D+L + ++ Sbjct: 151 LLRQGELDAAIVALPFPDQGLLVQPVYDEPFVVAVPKHHKWANRDSVSTDDLKSETMLLL 210 Query: 192 QRGSQPHQGLLQLCQEWGVLNPRVHAI------SSISAMVQLVEGGFGVATLPRASVRDL 245 G +L++C E + I SS+ + +V G G+ LP+AS+ D+ Sbjct: 211 GNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVASGIGITVLPQASIPDM 270 >gi|152981638|ref|YP_001353293.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 71.6 bits (174), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 76/310 (24%), Positives = 131/310 (42%), Gaps = 25/310 (8%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 M+L+ + F A S AAE+ H QS +++ I LE+E+G L++R R + A Sbjct: 1 MDLKSLRLFVAVAETGSFVAAAERHHTVQSNVTAHIKKLEDEVGAQLIERGTPA-RPSSA 59 Query: 61 GQRFQRLAVKLLDMQRQIRQEL-GGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYPDF 119 G A +++ + G +G L R+G++E+ LP L + +P+ Sbjct: 60 GFALMAYAERMIQAHDEALALFKNGEVSGSL--RVGAMETTTALRLPPLLTLFHASHPEV 117 Query: 120 ALELTVETSPVLTEQIRRGALDLVFTSTVGSDTAVRSRLMTPMDMVFVGHRERF------ 173 L+LT + L + G D VF + +L P + +RE Sbjct: 118 DLKLTTGPTAKLVAGLNEGRFDCVF---------IAGKLENPRLYQYKAYREELVLVSAS 168 Query: 174 -GTRVHTLDELAAHDLITFQRGSQPHQGLLQLCQEWGVLNPRVHAISSISAMVQLVEGGF 232 + + D L A + F +G Q + L + GV + R+ S+ A++ V G Sbjct: 169 PMKSMPSADTLRASTFLVFGQGCSYRQRVDVLLADSGVFSSRMVDFGSLDAILGCVGAGM 228 Query: 233 GVATLPRASVRDLTRRLPLRILRCEAPLAALQIH--ASYREDPSSSLAELVLDSALDHAR 290 G A +P+ R P+ L+ + L + + A+ R + +LA AL HA Sbjct: 229 GYALMPKVVFDAHKHRFPIYSLKLPSRLGVVDTYFVAAPRTGWAPALASFA--EALAHAT 286 Query: 291 RA-QAKGRAA 299 + Q +G+ A Sbjct: 287 ASKQLEGKIA 296 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 67.8 bits (164), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 14/194 (7%) Query: 6 VEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVAGQRF- 64 +E F AA S T AA +T + +S I+ LE LGV L R +Q RLT G+ + Sbjct: 13 IELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGRVYF 72 Query: 65 ---QRLAVKLLDMQRQIRQELGGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYPDFAL 121 + +L+D +RQ+ GG LLRI H L L E R RYPD + Sbjct: 73 EQCREALAQLVDAERQVS---GGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQV 129 Query: 122 ELTVETSPVLTEQIRRGALDLVFTSTVGSDTAVRSRLMTPMDMVFVG---HRERFGTRVH 178 E+ + + A DL +D+ + +R + ++V V + +R G + Sbjct: 130 EVHISNRNI---DFAEEAYDLAIRGRAPTDSNLIARKLEEAELVLVAAPSYLKRAG-KPK 185 Query: 179 TLDELAAHDLITFQ 192 TL++L H+ I F+ Sbjct: 186 TLEDLQKHECIQFE 199 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 639,005 Number of extensions: 24665 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 17 Length of query: 301 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 218 Effective length of database: 914,170 Effective search space: 199289060 Effective search space used: 199289060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)