BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3280.p (239 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981662|ref|YP_001352127.1| GntR family transcriptional reg... 72 3e-14 gi|152980771|ref|YP_001354254.1| GntR family transcriptional reg... 68 4e-13 >gi|152981662|ref|YP_001352127.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 251 Score = 72.4 bits (176), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 32/227 (14%) Query: 8 QKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGLLRIR 67 ++ + + V + L +I G+L P +L ERE+ LG+ R +REA++ LA GL+ I Sbjct: 22 RQRLHDAVVEHLQRLIIEGVLTPGMKLN-EREVCERLGISRTPLREAMKVLASEGLIDIV 80 Query: 68 QGEGTFVSSLETRELLEPLEMIIDLNPGTLEALFDARLIIETGVAALAATHMPEAELARL 127 G FVS + E+ E EM+ LEAL LAA + AE+A + Sbjct: 81 PNRGAFVSKMNDTEIWEAFEMM-----SGLEAL----------SGELAAERISPAEIADI 125 Query: 128 ARNVEDEARLL----SDPAAFSAADVEFHEAIIEACDNPFLQSIAGSLYMLGKKSRSITS 183 V +A L+ +D + + + H I EA N L+ I L R + Sbjct: 126 --KVLHQAMLVCRAQNDLPGYYSRNQTIHNKINEAARNSMLRQI-----YLSVNRRLLAL 178 Query: 184 RIPSTL-----ERSLQDHRDILAALKARDPHKAAEAMRHHLLRVRDA 225 R S +R++ +H +++ AL+ARD + A +R HLL RD+ Sbjct: 179 RFKSNFKEEKWDRAINEHDEMIQALEARDGKRLAGILRQHLLDKRDS 225 >gi|152980771|ref|YP_001354254.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 68.2 bits (165), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 14/209 (6%) Query: 12 SEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGLLRIRQGEG 71 SE + +++ MI G LKP Q L E LA GV R +REA+ LA +G++ IR G Sbjct: 15 SETLREQIEEMIAVGTLKPGQHLD-ETVLAERFGVSRTPIREALIQLASMGIVVIRPRRG 73 Query: 72 TFVSSLETRELLEPLEMIIDLNPGTLEALFDARLIIETGVAALAATHMPEAELARLARNV 131 V+ + ++L+E E++ +L + A AR + A L ATH+ + Sbjct: 74 AIVAEIGPQQLIEMFEVMAELE--AMCARLAARRMSPAEHAILMATHLA-------CKQA 124 Query: 132 EDEARLLSDPAAFSAADVEFHEAIIEACDNPFLQSIAGSLYMLGKKSRSITSRIPSTLER 191 D+A D A+ + EFH+ I N FL+ A +L + R + R+ + + Sbjct: 125 RDDA----DSDAYFYKNEEFHQQIYIGSKNTFLEEQARALQRRLRPYRRLQLRVRNRVTA 180 Query: 192 SLQDHRDILAALKARDPHKAAEAMRHHLL 220 S +H ++ A+ AAE +R H++ Sbjct: 181 SFDEHGAVVDAIIEGKGDLAAELLRQHIM 209 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 485,231 Number of extensions: 17301 Number of successful extensions: 87 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 88 Number of HSP's successfully gapped: 3 Length of query: 239 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 158 Effective length of database: 921,564 Effective search space: 145607112 Effective search space used: 145607112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)