BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3279.p
         (463 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980380|ref|YP_001352765.1| hypothetical protein mma_1075 [...   317   8e-88

>gi|152980380|ref|YP_001352765.1| hypothetical protein mma_1075
           [Janthinobacterium sp. Marseille]
          Length = 458

 Score =  317 bits (813), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 173/444 (38%), Positives = 265/444 (59%), Gaps = 16/444 (3%)

Query: 19  ARFVAISWRDLAVSFGPIILLILVGAWLVIWLIRPAPPSSITIAAGPKDSNFWRVAERYK 78
           ++F   S RDL V+ GP+ +L++   ++   L+ P+PP  +T+A G ++S +    ++Y 
Sbjct: 8   SQFTQFSLRDLIVTAGPMTVLVIALCYVAYRLVDPSPPKQVTLATGQENSAYEEFGKKYA 67

Query: 79  TLLARDGIRLDIVETGGSLDNLKRLADPDQDIDVGFVQGGLASAVPAEALESLVSLGSIS 138
             L + GI++ +V + GS +NL+RL DPD  +D+ FVQ G      A+    LVSLGS+ 
Sbjct: 68  AALGKFGIKVTLVPSLGSQENLQRLMDPDSGVDIAFVQSGSIEQQAAKD-AGLVSLGSLF 126

Query: 139 YVPVSVYYRAPPPREDGRPVPPLRQLSELAGKRIAIGGQGSGSSVLAATLLKANGVENGG 198
             PV ++YR     E  +    L QL++L G R+ +G +G+G   L   +L  NG+E G 
Sbjct: 127 TEPVWLFYR-----ESKK----LTQLTQLKGLRVNVGPEGTGVPKLFKNILSVNGLEPGD 177

Query: 199 ATQLLNIGGDEAAHALTSGKIDAAFLMGDSVSVATMGKLLRAPGIRLLDFSQADAYVRRF 258
             ++  +    A   L  G+IDA  +   +     +  LL+ PGI+L DF+QA+AY RRF
Sbjct: 178 -VKIRQLENTPATVELLEGRIDA-LVFSSAPDALLIQMLLQTPGIKLFDFTQAEAYSRRF 235

Query: 259 RYLNTLKMPMGVFDLAHNLPARDTLLIAPTAELVARDDLHPALSDLLIAAAREVHGKANV 318
             L  + +P G+ DL  +LP ++  LIAPTA LVAR+DLHPAL DL + AA  +HG A  
Sbjct: 236 PSLTHVILPRGIVDLGRDLPPKNYHLIAPTATLVAREDLHPALIDLFVQAAGTIHGGAGW 295

Query: 319 LQKAGEFPAPLEHEYPISDDAARYYKSGKTFFYRTLPFWMASLLDRAVVIVLPVILLLIP 378
            +K GEFP     E P+  +A ++YK G  F  R + FW+A+  +R  V+++ +  L++P
Sbjct: 296 FRKQGEFPNASYTEIPVIPEAEKFYKDGPPFLQRYMSFWLANFFERMWVVIVALGALILP 355

Query: 379 GIRLVPMLYGWRVRSRIYRWYGELIALERGLTRDSPEQQAEM----LKRLDEIEIAVNRM 434
             R+VP LY W+VRSR+YRWYG+L  +E+ +    P ++  +    LKRL EIE  VN++
Sbjct: 356 LSRIVPPLYVWKVRSRVYRWYGQLRTVEQVIEDVPPAKRNTVYPAQLKRLSEIEEKVNQI 415

Query: 435 KMPLAFADQFYVLREHIGFVRARL 458
            +PL+FAD+ Y LR +I  VR R+
Sbjct: 416 SIPLSFADELYRLRSNINLVRKRI 439


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,046,607
Number of extensions: 43421
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 376
Effective length of database: 899,382
Effective search space: 338167632
Effective search space used: 338167632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)