BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3273.p (381 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 393 e-110 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 202 3e-53 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 193 1e-50 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 150 1e-37 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 146 2e-36 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 393 bits (1009), Expect = e-110, Method: Compositional matrix adjust. Identities = 204/338 (60%), Positives = 249/338 (73%), Gaps = 4/338 (1%) Query: 37 VDAVSLRLQPGELGALIGPSGSGKTSLLRAVAGLEPAQAGRILLDGQLLEGDGVRVAAEA 96 V ++S LQ GE+G L+G SG GKT++LRA+AG E AGRI L G+ L EA Sbjct: 30 VHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIAGRITLGGKELSNAQHTTVPEA 89 Query: 97 RRIGMVFQDFALFPHLDVAANIGFGLRGMARTQREQIVTQMLDLVGLPEAGRKFPHQLSG 156 R +G+VFQD+ALFPHL V+ NIGFGLR +A +R + ++L LVGL +KFPH+LSG Sbjct: 90 RHVGVVFQDYALFPHLSVSDNIGFGLRKLAAAERNGRINKLLALVGLQAQEKKFPHELSG 149 Query: 157 GQQQRIALARALAPQPRLLLLDEPFSSLDVELRERLAHDVRDILKRTGTTALMVTHDQLE 216 GQQQR+ALARALAPQP LLLLDEPFS+LDV+LRERLA +VRDILK GTTA++VTHDQ E Sbjct: 150 GQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTHDQHE 209 Query: 217 AFAVADVVGVMRHGRLEQWDSPYALYHRPATRFAADFIGHGVLLRGQLQPVTTGASPQIE 276 AFA+AD +GVM+ G + QWD Y LYHRPA RF ADFIG GV + G + + IE Sbjct: 210 AFAIADQIGVMQDGVIVQWDQAYNLYHRPANRFVADFIGLGVFVPGTVDKQRQDVA--IE 267 Query: 277 VQTAAGLLRGIPLQAPSPSPTQVDVLLRADDVLHDDASPFKARVLRKSFRGAQFLYTLAL 336 + T L +G+P+ VDVLLRADDV+HDD SP KA V+RK+FRGA+FLYTL L Sbjct: 268 LGTLP-LCQGLPV-CEVDDQNAVDVLLRADDVIHDDNSPLKAEVIRKAFRGAEFLYTLKL 325 Query: 337 ENGQQLLSLVPSHHDHAIGEWIGIRLDVTHLVTFPGAA 374 +GQQLL+LVPSHHDHA+GE IGIRL+ H+VTFP A Sbjct: 326 PSGQQLLALVPSHHDHALGERIGIRLEAEHVVTFPKQA 363 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 202 bits (513), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 112/247 (45%), Positives = 157/247 (63%), Gaps = 10/247 (4%) Query: 19 FLEVEHLSIRYPRTATAAVDAVSLRLQPGELGALIGPSGSGKTSLLRAVAGLEPAQAGRI 78 LE+ +L+ R+ VD +SL ++ GE L+GPSG GKT+LLR +AG + AG+I Sbjct: 3 LLEIRNLTRRF--GDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQI 60 Query: 79 LLDGQLLEGDGVRVAAEARRIGMVFQDFALFPHLDVAANIGFGLRGMARTQREQI---VT 135 LLDG L G V E R + VFQ++ALFPH+ V NI F L MA T + +I V Sbjct: 61 LLDGVDLTG----VPPEQRPVRTVFQNYALFPHMTVGGNIAFPLE-MANTPKAEIQKKVD 115 Query: 136 QMLDLVGLPEAGRKFPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRERLAHD 195 + L+ V L ++PH+LSGGQ+QR+++ARAL +P+LLLLDEP S+LD +LRE++ + Sbjct: 116 EALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIE 175 Query: 196 VRDILKRTGTTALMVTHDQLEAFAVADVVGVMRHGRLEQWDSPYALYHRPATRFAADFIG 255 + ++ K G T + VTHDQ EA A++ + VM G++EQ D P +Y P +RF ADFIG Sbjct: 176 LINLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFIG 235 Query: 256 HGVLLRG 262 L G Sbjct: 236 TCNLFDG 242 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 193 bits (491), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 118/287 (41%), Positives = 170/287 (59%), Gaps = 25/287 (8%) Query: 18 MFLEVEHLSIRYPRTATAAVDAVSLRLQPGELGALIGPSGSGKTSLLRAVAGLEPAQAGR 77 M +EV+++ ++ A++ VSL GEL AL+GPSG GKT+LLR +AGLE G+ Sbjct: 1 MSIEVKNIQKQFGNFV--ALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQ 58 Query: 78 ILLDGQLLEGDGVRVAAEARRIGMVFQDFALFPHLDVAANIGFGLRGM------ARTQRE 131 +LLDG+ VR R++G VFQ +ALF H+ V NI FGLR + +Q + Sbjct: 59 VLLDGEDASARHVR----ERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIK 114 Query: 132 QIVTQMLDLVGLPEAGRKFPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRER 191 + VT++L+LV L ++P QLSGGQ+QRIALARALA +PR+LLLDEPF +LD ++R+ Sbjct: 115 EKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKE 174 Query: 192 LAHDVRDILKRTGTTALMVTHDQLEAFAVADVVGVMRHGRLEQWDSPYALYHRPATRFAA 251 L +R + T++ VTHDQ EA VAD + +M G +EQ +P +Y+ PA+ F Sbjct: 175 LRRWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVY 234 Query: 252 DFIGHGVLLRGQLQPVTTGASPQIEVQTAAGLLRGIPLQAPSPSPTQ 298 F+G+ L G++ +S GI +AP + TQ Sbjct: 235 GFLGNVNLFHGRVHEGILQSS-------------GIAFEAPEHAETQ 268 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 150 bits (379), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 131/233 (56%), Gaps = 4/233 (1%) Query: 26 SIRYPRTATAAVDAVSLRLQPGELGALIGPSGSGKTSLLRAVAGLEPAQAGRILLDGQLL 85 +++ + + + + ++PGE+ A+IG SGSGK++LLR + GLE G I + G L Sbjct: 8 NVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISVAGSHL 67 Query: 86 EGDGVRVAAEARRIGMVFQDFALFPHLDVAANIGFG---LRGMARTQREQIVTQMLDLVG 142 + + ++GM+FQ F LFPHL V NI ++G++ + + L+ VG Sbjct: 68 GKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARALAMKNLEKVG 127 Query: 143 LPEAGRKFPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRERLAHDVRDILKR 202 L E FP QLSGGQQQR+A+ARAL+ +P+ LL DE S+LD EL + + VR L Sbjct: 128 LSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLNVVRG-LAH 186 Query: 203 TGTTALMVTHDQLEAFAVADVVGVMRHGRLEQWDSPYALYHRPATRFAADFIG 255 G T +MVTH+ A V D V M G++ + +P ++ PAT F+G Sbjct: 187 EGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELKQFLG 239 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/203 (41%), Positives = 119/203 (58%), Gaps = 11/203 (5%) Query: 36 AVDAVSLRLQPGELGALIGPSGSGKTSLLRAVAGLEPAQAGRILLDGQLLEGDGVRVAAE 95 A+ V+L + GE LIG SG GK++LLR +AG E +G + G ++G Sbjct: 32 ALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSSGSANMYGMPIDG-------P 84 Query: 96 ARRIGMVFQDFALFPHLDVAANIGFGLR--GMARTQREQIVTQMLDLVGLPEAGRKFPHQ 153 + GMVFQD+ LFP L V NIGFG R + + + E++ D+VGL + +P Q Sbjct: 85 SPERGMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAYYTDMVGLTKFANYYPGQ 144 Query: 154 LSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRERLAHDVRDILKRTGTTALMVTHD 213 LSGG +QR+A+AR LA +LL+DEPF +LD RE+L D+ +I +RT T + VTH Sbjct: 145 LSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLEIWERTKVTVVFVTHA 204 Query: 214 QLEAFAVADVVGVMRH--GRLEQ 234 EA ++D V VM GR+E+ Sbjct: 205 VEEAVMLSDRVVVMTAGPGRIEE 227 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 880,228 Number of extensions: 37394 Number of successful extensions: 310 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 238 Number of HSP's successfully gapped: 65 Length of query: 381 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 296 Effective length of database: 906,776 Effective search space: 268405696 Effective search space used: 268405696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)