BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3272.p
         (555 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979941|ref|YP_001352418.1| iron(III) ABC-type transport sy...   425   e-120

>gi|152979941|ref|YP_001352418.1| iron(III) ABC-type transport
           system permease protein [Janthinobacterium sp.
           Marseille]
          Length = 565

 Score =  425 bits (1093), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 262/547 (47%), Positives = 352/547 (64%), Gaps = 31/547 (5%)

Query: 7   LAVLIALPLLGILAAWLGLDAAG-VDSLRQQAQTVLPGYLATSGWLALLVPLGVVLVGGA 65
           +AVL+ LP+ G+L+  L     G + +      TVLP Y+  S  LA++V +   ++G  
Sbjct: 41  IAVLVGLPVAGVLSNLLSGSVGGELSTFSHLWATVLPEYIGNSLLLAMIVAVLTAVLGIG 100

Query: 66  TAVTVSLFEFRGRRWLSWALLLPMAMPAYVSAYAYTDFLQYAGLVQSTLRGWFPGWR--- 122
           TA  V++F F G+++  WAL+LP+AMPAYV AYAYTDFLQ+ G VQS LR  F GW+   
Sbjct: 101 TAWLVAVFNFPGKKFFEWALILPLAMPAYVVAYAYTDFLQFTGPVQSGLRALF-GWQGPT 159

Query: 123 ---MDVRGLPGAICMFVFTLYPYAYLLARNALCERGTHLMEAARMLGTPLSARIVRVALP 179
                +R + GA  +F F LYPY YLLARNA  ER   + +AAR LG        +V+LP
Sbjct: 160 YWFPQIRSVGGAGLLFAFVLYPYVYLLARNAFIERSPRMWDAARTLGAGPWQAFCQVSLP 219

Query: 180 LARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRLAAAQYASLLLLFV 239
           LARPA  AG ALALMETLADYG  AYFG+ T TTGIYK+W +  DR AAAQ A +LLL V
Sbjct: 220 LARPAAVAGIALALMETLADYGAVAYFGVPTLTTGIYKSWYIFSDRNAAAQIAGVLLLAV 279

Query: 240 ALLLWLERREQGRMRFAASRGGRGSDGAEARLPRLSRGPT-LLAWLVCALPVVLGFLLPV 298
             L+ +E++ +GR R+ A  G R +    A+LP L +G    +A   CALPVVLGF  P+
Sbjct: 280 MGLMLMEQKSRGRARYYAV-GARSA----AQLPTLLQGRQGWMATAFCALPVVLGFFAPL 334

Query: 299 AILLHLWWGELGRAPAGLDIAAPAFDLGRYAGWVWNSFRFGGLAAFIAIGLALALCFALR 358
            ILLHL W E             +F   RY  W+ N+   G + A IAI + + + +A R
Sbjct: 335 LILLHLLWQE----------EVISFS-ARYIDWLQNTIILGAVTALIAIAICVLMAYAAR 383

Query: 359 AGGLPRLQGALLRLTARLAGMGYAIPGSVIAVGILLPVAWLQALWPAAGLGVLLTATSLG 418
                +LQ     +  R+  MGYAIPG+VIAVGIL+P+A+L       G+ ++L+ + + 
Sbjct: 384 VTN-SKLQA----VCNRIVSMGYAIPGAVIAVGILIPLAYLDNWNAQHGVALVLSGSVIA 438

Query: 419 VIYAYLVRFTAVAVQSVESGYTRIPASLDEAARTLGSSRAVIAWRLHMPLLWRSLAVAAL 478
           ++YAYLVRF AV+ Q+V++G  +I  S+D +AR+LG     +  R+H+PLLWRS+  A L
Sbjct: 439 LVYAYLVRFLAVSFQTVQAGLLKITPSMDASARSLGHGLGAMLMRIHVPLLWRSVLTAGL 498

Query: 479 MVFVDVVKELPATLLLRPFDTDTLAVIAHNLARDERLGEAALPALSIVLVGLAPVLLVMR 538
           +VFVDVVKELPATL +RPF+ DTLAVI H LA DERLGEAALPAL+IV++ + PV+++ R
Sbjct: 499 LVFVDVVKELPATLTIRPFNFDTLAVITHQLASDERLGEAALPALTIVMIAIVPVIILAR 558

Query: 539 AL-DGRR 544
           A+  GRR
Sbjct: 559 AIAAGRR 565


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,019,535
Number of extensions: 36880
Number of successful extensions: 221
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 4
Length of query: 555
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 467
Effective length of database: 895,685
Effective search space: 418284895
Effective search space used: 418284895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)