BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3269.p (695 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 946 0.0 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 402 e-113 gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 388 e-109 gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 382 e-107 gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protei... 348 4e-97 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/684 (68%), Positives = 564/684 (82%), Gaps = 3/684 (0%) Query: 1 MLIAHYDKLLVVVSLLVAILASYTALDMAERISTSNHLYSRAARFWLAGGAIAMGVGIWS 60 ML AHYD LLV++SLLVAILASYTALDMA RI++++ R + WLAGGA+AMG+GIWS Sbjct: 1 MLTAHYDSLLVLISLLVAILASYTALDMAGRINSAS---VRGSILWLAGGAVAMGIGIWS 57 Query: 61 MHFIGMLAFRLPIALGYDAWITLVSLLIAVLTSGFALWIVTRAELPLRRLLGSAVLMGSG 120 MHFIGML+F LPI LGYD IT++SL+IA++ SGFALW +++AELPL +LLGSA+LMG Sbjct: 58 MHFIGMLSFNLPIPLGYDLGITVLSLVIAIVASGFALWRISQAELPLFQLLGSAILMGVA 117 Query: 121 IVAMHYTGMAAMRMQPGIDYDLVLFVGSVIIAVVTSATALWIAFSLRRNTPHVRVARAGA 180 I AMHYTGMAAMRM PGI+YD +LF S++IA+ S ALWIAF LR+NTP+V RA A Sbjct: 118 IAAMHYTGMAAMRMTPGIEYDPLLFALSILIAISASGAALWIAFRLRKNTPNVVRWRAMA 177 Query: 181 SVVMGLAIVGMHYTGMAAASFPRGAVCLAAREGVGSGWLAILIIVVTLAVLTIALLTSVL 240 +VVMG AI+GMHYTGMAAA+FP G++C AA EGV GWLAI++IV TLAVL IALLTSVL Sbjct: 178 AVVMGAAIIGMHYTGMAAANFPLGSICSAAVEGVSPGWLAIVVIVTTLAVLAIALLTSVL 237 Query: 241 DARLESRTAKLARSLAEANEELTQMVLHDHLTKLPNRTLLEDRLTQAIHKAARTQGHFAL 300 DARL+S+T KL RSLA AN+ELT+ L D+LTKLPNRTLLEDRL Q +HKA R Q FAL Sbjct: 238 DARLDSQTGKLVRSLALANQELTKQALQDNLTKLPNRTLLEDRLDQMVHKAVREQSRFAL 297 Query: 301 MFMDLDGFKAINDSLGHHVGDRLLVEVARRLSSIMRAQDTVARLGGDEFVILVELERPEG 360 MF+DLDGFKAINDSLGHH+GD LL++VA+R+ +RAQDT ARLGGDEFV+L+E+ PE Sbjct: 298 MFIDLDGFKAINDSLGHHIGDLLLIDVAKRIRDNIRAQDTAARLGGDEFVMLIEVNEPED 357 Query: 361 AMPVAEKLVEVVNQAFTLAQQELRVSASVGIAIYPEDGATRHDLVINADAAMYHTKRAGR 420 A VA+KL +NQ F +AQ L +SAS+GIA+YPEDG+TRHDL+I+ADAAMYHTK GR Sbjct: 358 AASVADKLCTTLNQPFDIAQYNLGISASIGIAVYPEDGSTRHDLLIHADAAMYHTKSTGR 417 Query: 421 NGYHFFEPSMNANAHHQLQWLQELRVAVERKQLRLVYQPKFGLPDGQVLGAEALLRWQHP 480 NGYHFFE SMN NAH+QLQ +Q+LR A+ERK+ RL YQPKF DG V+GAEALLRWQHP Sbjct: 418 NGYHFFEASMNINAHNQLQVIQDLRTALERKEFRLHYQPKFNTTDGVVVGAEALLRWQHP 477 Query: 481 QRGLVGPDEFIGLAERSGLIIPIGAWVLDEACRQMRQWLTLGYAHWKIAVNLSALQFADP 540 RG+V P +FI LAE++GLI+PIG WVLDEACRQMR+W GY WKIAVNLS++QF++ Sbjct: 478 IRGIVAPADFISLAEKTGLIVPIGEWVLDEACRQMRKWYDEGYQQWKIAVNLSSVQFSND 537 Query: 541 HLVEVVRTALDKHQLPPHCLTLEVTESTAMHDTEASLQTLQKIAELGVEIAIDDFGTGYS 600 +LVE+V+ L ++ LP CL LEVTESTAMH+ EASL L+++ LGVEI+IDDFGTGYS Sbjct: 538 NLVEMVKETLARNNLPATCLMLEVTESTAMHNVEASLTILEQLVSLGVEISIDDFGTGYS 597 Query: 601 SLLYLKRLPAHELKIDRGFVRDLSEGSEDAAIVSAIVALGRALRLRIVAEGVETEGQQQF 660 SLLYLKRLPA ELKIDRGF+RDL+ GS+DA+IVSAIVALGR+L LRIVAEGVETE QQ++ Sbjct: 598 SLLYLKRLPATELKIDRGFIRDLAHGSDDASIVSAIVALGRSLNLRIVAEGVETEKQQEY 657 Query: 661 LAAAGCHALQGYLRGRPMAPDLFL 684 L GC LQGY G PMA + F+ Sbjct: 658 LTTLGCDTLQGYFMGHPMASEQFM 681 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 402 bits (1032), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/434 (45%), Positives = 285/434 (65%), Gaps = 3/434 (0%) Query: 261 ELTQMVLHDHLTKLPNRTLLEDRLTQAIHKAARTQGHFALMFMDLDGFKAINDSLGHHVG 320 EL D LT L NR+LL DRL+QAI A R + F+DLD FK +ND+LGH G Sbjct: 514 ELEFQTNRDALTGLANRSLLRDRLSQAISYAHRYNHPIWIAFVDLDRFKFVNDTLGHQAG 573 Query: 321 DRLLVEVARRLSSIMRAQDTVARLGGDEFVILVELERPEGAMP--VAEKLVEVVNQAFTL 378 D LL +A RL +R DTV+R+GGDEFV+++ ER + + + +++++ + Q T+ Sbjct: 574 DLLLKAIAERLQHAVRDTDTVSRMGGDEFVLILP-ERVDAGLSTGIVQRIMDGIAQPLTI 632 Query: 379 AQQELRVSASVGIAIYPEDGATRHDLVINADAAMYHTKRAGRNGYHFFEPSMNANAHHQL 438 E +S+S+G+A+YP DG T +L+ +AD AMY K GRN + F+ SMN A +L Sbjct: 633 EGHEFFISSSIGVAVYPNDGVTPEELIKHADIAMYRAKETGRNNFQFYTSSMNERALERL 692 Query: 439 QWLQELRVAVERKQLRLVYQPKFGLPDGQVLGAEALLRWQHPQRGLVGPDEFIGLAERSG 498 + +LR A+ER + L YQP+ L G+++G EAL+RWQHP+ G++ P FIGLAE +G Sbjct: 693 RLEGDLRNAMERGEFILHYQPQLDLRTGKIVGVEALIRWQHPELGMIPPMRFIGLAEETG 752 Query: 499 LIIPIGAWVLDEACRQMRQWLTLGYAHWKIAVNLSALQFADPHLVEVVRTALDKHQLPPH 558 LI+PIGAWV+ EACRQ + W G +++VNLSA QFA L+E + AL++ QLPP Sbjct: 753 LIVPIGAWVIREACRQNKVWQEHGLGSLRMSVNLSARQFAQQDLLESIALALEETQLPPQ 812 Query: 559 CLTLEVTESTAMHDTEASLQTLQKIAELGVEIAIDDFGTGYSSLLYLKRLPAHELKIDRG 618 CL +E+TES M D + ++ L+++ LGV+++IDDFGTGYSSL YLKR P LKIDR Sbjct: 813 CLEIELTESLVMADVDHAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRS 872 Query: 619 FVRDLSEGSEDAAIVSAIVALGRALRLRIVAEGVETEGQQQFLAAAGCHALQGYLRGRPM 678 FV D++ +DAAIV++I++L +LRL ++AEGVETE Q +L C +QGY RP+ Sbjct: 873 FVNDITTDPDDAAIVASIISLAHSLRLTVIAEGVETEEQLAYLQQHDCDQIQGYFFSRPI 932 Query: 679 APDLFLQTMREQQK 692 D +++ ++ Sbjct: 933 TADAMEVMLKDDKR 946 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 388 bits (997), Expect = e-109, Method: Compositional matrix adjust. Identities = 202/437 (46%), Positives = 284/437 (64%), Gaps = 4/437 (0%) Query: 262 LTQMVLHDHLTKLPNRTLLEDRLTQAIHKAARTQGHFALMFMDLDGFKAINDSLGHHVGD 321 L ++ HD LT LPNR LL+DRL AI +AR ++ +DLD FK +ND++GH GD Sbjct: 472 LHRLASHDVLTGLPNRALLQDRLENAIAYSARNGHAVWVVLVDLDRFKFVNDTMGHQAGD 531 Query: 322 RLLVEVARRLSSIMRAQDTVARLGGDEFVILVEL--ERPEG-AMPVAEKLVEVVNQAFTL 378 LL ++ RL + +R DTVARLGGDEFV+++ + P G + V ++++E V + T+ Sbjct: 532 VLLKIISDRLQASVRESDTVARLGGDEFVLVLPECGDGPSGYSSDVIQRIMEAVVKPLTI 591 Query: 379 AQQELRVSASVGIAIYPEDGATRHDLVINADAAMYHTKRAGRNGYHFFEPSMNANAHHQL 438 E +S S+GIA+YP DGA L+ +AD AMY +K GRN + F+ P+MN A +L Sbjct: 592 QGSEFFLSCSMGIAVYPNDGADPTTLLAHADVAMYRSKELGRNNFQFYTPAMNDQALERL 651 Query: 439 QWLQELRVAVERKQLRLVYQPKFGLPDGQVLGAEALLRWQHPQRGLVGPDEFIGLAERSG 498 + ELR A+E +L L YQP+ L G ++G EAL+RW HP G+V P FI LAE +G Sbjct: 652 RIEGELRHAIELNELVLHYQPQVDLHTGAIVGLEALVRWNHPILGMVQPGSFISLAEETG 711 Query: 499 LIIPIGAWVLDEACRQMRQWLTLGYAHWKIAVNLSALQFADPHLVEVVRTALDKHQLPPH 558 LIIPIGAWVL ACRQ + W +G+ +IAVNLSA QF L+E ++ L + L Sbjct: 712 LIIPIGAWVLQTACRQAKAWQDMGFTQLRIAVNLSARQFTQASLLESIKDTLQETGLEAR 771 Query: 559 CLTLEVTESTAMHDTEASLQTLQKIAELGVEIAIDDFGTGYSSLLYLKRLPAHELKIDRG 618 L +E+TES+ M D E ++ TL+ + LGV++++DDFGTG+SSL YLKR P LKIDR Sbjct: 772 FLEIELTESSVMADIERNILTLRDLKSLGVQLSVDDFGTGHSSLAYLKRFPIDTLKIDRS 831 Query: 619 FVRDLSEGSEDAAIVSAIVALGRALRLRIVAEGVETEGQQQFLAAAGCHALQGYLRGRPM 678 FVRD++ +DA+IVS+I++L L+L ++AEGVET Q L A GC+ +QGY +P+ Sbjct: 832 FVRDIAINQDDASIVSSIISLAHNLKLNVIAEGVETASQMDILRAQGCNEIQGYYFCKPL 891 Query: 679 APDLFLQTMREQQKSAA 695 D ++T+ + SAA Sbjct: 892 PSDQ-IETLLLNESSAA 907 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 382 bits (982), Expect = e-107, Method: Compositional matrix adjust. Identities = 205/433 (47%), Positives = 268/433 (61%), Gaps = 3/433 (0%) Query: 253 RSLAEANEELTQMVLHDHLTKLPNRTLLEDRLTQAIHKAARTQGHFALMFMDLDGFKAIN 312 R L EA E+ HD LT LPNRTLL DR+ QA+ + R A+ F+DLD FK IN Sbjct: 264 RKLHEA--EIQFQATHDALTGLPNRTLLYDRMQQAVLHSERYGKLTAIAFLDLDQFKFIN 321 Query: 313 DSLGHHVGDRLLVEVARRLSSIMRAQDTVARLGGDEFVILVELERPEGAMP-VAEKLVEV 371 DSLGH VGD LL A+RL+S +R DTVAR GGDEFV+L+ + E A+ ++++ Sbjct: 322 DSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTDQPNEEAITHTMQRVLHE 381 Query: 372 VNQAFTLAQQELRVSASVGIAIYPEDGATRHDLVINADAAMYHTKRAGRNGYHFFEPSMN 431 V+Q + E +++ S+G+ + P+DG L+ NAD+AMY K GRN + +F MN Sbjct: 382 VSQPWKANDLEFQITCSIGLTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFSAEMN 441 Query: 432 ANAHHQLQWLQELRVAVERKQLRLVYQPKFGLPDGQVLGAEALLRWQHPQRGLVGPDEFI 491 ++ +L+ L LR A+ + L YQPK L Q++GAEAL+RW G+V P FI Sbjct: 442 SSVTDRLELLNRLRQAITNEDFVLHYQPKVSLASHQIIGAEALVRWNSAHSGMVSPASFI 501 Query: 492 GLAERSGLIIPIGAWVLDEACRQMRQWLTLGYAHWKIAVNLSALQFADPHLVEVVRTALD 551 LAE +GLIIP+G WVL ACRQ R W GY I+VNLS Q A +VEVV L Sbjct: 502 PLAEETGLIIPLGEWVLRTACRQNRAWQDAGYPPIPISVNLSPRQLARGDIVEVVERILT 561 Query: 552 KHQLPPHCLTLEVTESTAMHDTEASLQTLQKIAELGVEIAIDDFGTGYSSLLYLKRLPAH 611 + L L LE+TES D E S L ++ LGV+I++DDFGTGYSSL YLKR P Sbjct: 562 ETGLEAQHLELEITESVMTTDVEKSFALLTQLRSLGVKISLDDFGTGYSSLSYLKRFPVD 621 Query: 612 ELKIDRGFVRDLSEGSEDAAIVSAIVALGRALRLRIVAEGVETEGQQQFLAAAGCHALQG 671 LKID+ FVRD++ + AAIV AI++LGR L L ++AEG+ETE Q QFL A GC QG Sbjct: 622 TLKIDQSFVRDIATDQDSAAIVKAIISLGRNLNLTVLAEGIETEDQFQFLLANGCDEGQG 681 Query: 672 YLRGRPMAPDLFL 684 YL +P+ F+ Sbjct: 682 YLMSKPVPNKNFV 694 >gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 641 Score = 348 bits (894), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 190/476 (39%), Positives = 290/476 (60%), Gaps = 7/476 (1%) Query: 219 LAILIIVVTLAVLTIAL----LTSVLDARLESRTAKLARSLAEANEELTQMVLHDHLTKL 274 +++ ++++ +L IA L +VL A + + + + + E L Q HD+LT + Sbjct: 160 VSVAVVLLMFGLLVIAYRQRRLYNVLAASEQEKRSLIGQLEQEKGRALLQAS-HDYLTGI 218 Query: 275 PNRTLLEDRLTQAIHKAARTQGHFALMFMDLDGFKAINDSLGHHVGDRLLVEVARRLSSI 334 PNR L + + +A R++ + + F+DLD FK IND+LGH VGD LL VARRL Sbjct: 219 PNRMLFYELAAAELARARRSRKLYGMFFLDLDKFKLINDTLGHAVGDLLLQGVARRLRES 278 Query: 335 MRAQDTVARLGGDEFVILV-ELERPEGAMPVAEKLVEVVNQAF-TLAQQELRVSASVGIA 392 +R D +ARLGGDEFV+L+ E+ VA KLVEVV + F L ++ +S S+GIA Sbjct: 279 LREYDLLARLGGDEFVMLISEMTSENDIAKVAAKLVEVVREPFPDLDGHDIEISPSIGIA 338 Query: 393 IYPEDGATRHDLVINADAAMYHTKRAGRNGYHFFEPSMNANAHHQLQWLQELRVAVERKQ 452 +YP DG L+ +ADAAMYH K AG Y FF+ S+NA++ ++ L + A+ + Sbjct: 339 LYPRDGQNVETLLTHADAAMYHAKAAGAGTYRFFDSSLNASSARDVELLTRFKRAIRDDE 398 Query: 453 LRLVYQPKFGLPDGQVLGAEALLRWQHPQRGLVGPDEFIGLAERSGLIIPIGAWVLDEAC 512 L YQP+ L + ++G EAL+RWQHP+ GL+ P++FI LAE + LI+ +G WV+D AC Sbjct: 399 FCLHYQPRVELQEFGLVGLEALVRWQHPEHGLIFPNDFITLAEENDLIVLLGRWVIDAAC 458 Query: 513 RQMRQWLTLGYAHWKIAVNLSALQFADPHLVEVVRTALDKHQLPPHCLTLEVTESTAMHD 572 RQ+ W G +A+N+S Q D L+E V L ++Q+ P L +E+TE + D Sbjct: 459 RQIADWRAAGLPLVPVAINVSPKQLKDSALLETVMETLARYQIEPGLLEIEITEGCFIED 518 Query: 573 TEASLQTLQKIAELGVEIAIDDFGTGYSSLLYLKRLPAHELKIDRGFVRDLSEGSEDAAI 632 + + + L+++ G+ IA+DD+GTG+S L LK+LP + +KIDR FVRD+ + DA I Sbjct: 519 FDTANRVLEQLRANGLRIALDDYGTGFSGLKNLKKLPIYAIKIDRSFVRDIRNDNSDAVI 578 Query: 633 VSAIVALGRALRLRIVAEGVETEGQQQFLAAAGCHALQGYLRGRPMAPDLFLQTMR 688 V++ ++L L L++VAEGVE++ Q L AGC +QG+ RP+A ++ +R Sbjct: 579 VASTISLAHNLGLQVVAEGVESKEQLVHLKTAGCDQVQGFYFKRPVAAAGIVEILR 634 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,542,438 Number of extensions: 64451 Number of successful extensions: 394 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 343 Number of HSP's successfully gapped: 34 Length of query: 695 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 605 Effective length of database: 888,291 Effective search space: 537416055 Effective search space used: 537416055 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)