BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3265.p
         (461 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980856|ref|YP_001353869.1| ribonuclease BN transmembrane p...   507   e-145

>gi|152980856|ref|YP_001353869.1| ribonuclease BN transmembrane
           protein [Janthinobacterium sp. Marseille]
          Length = 435

 Score =  507 bits (1305), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 248/427 (58%), Positives = 313/427 (73%), Gaps = 6/427 (1%)

Query: 11  MRGLTRQQLSDLLRFAGRRLREDRLPQVAGSLTFTTILSLVPMLTIALALFTAFPLFSTF 70
            R LT  Q+ +L  FA RRL E+RLPQVAGSLTFTT+L+LVP+LTIALA+FT FPLF+TF
Sbjct: 9   FRELTWSQVRNLFHFAARRLTEERLPQVAGSLTFTTVLALVPILTIALAIFTTFPLFNTF 68

Query: 71  RASLEAYFVDNLMPKGVANTILGYLNQFAAKSARISAVGGVLLILTSVLTMSTIESVFNQ 130
           R SLEAYFV NLMPKG+ANTILGYL QF++K+ R+SA G V LI+T+V  M  I+ VFNQ
Sbjct: 69  RTSLEAYFVHNLMPKGIANTILGYLTQFSSKATRLSAFGAVALIVTAVAMMLMIDRVFNQ 128

Query: 131 IWRVKKSRPLVQRVLVYWAIITLGPLLIGVSISVTSYLSTATGGAVKSLPWLGASFYTLV 190
           IWRVK  RP+VQR+LVYWAI+TLGPLLIG S++ TSYL TAT G V+ +P++GA FYT +
Sbjct: 129 IWRVKTKRPIVQRILVYWAIVTLGPLLIGASMTFTSYLFTATDGVVRGVPFVGAVFYTSI 188

Query: 191 SLMFSTLAYTLLYSTVPNQTVDWRDAAAGGLLAGIGLEIAKRLFAAYILKFPTYTMVYGT 250
           S++ S +A+T LY  VPN+ V+WRDA  GGLLA I  EI KRLFAA+++K PTYT+VYG 
Sbjct: 189 SILLSMVAFTSLYIVVPNRLVEWRDAVVGGLLAAIAFEIVKRLFAAFVIKVPTYTVVYGA 248

Query: 251 VAVLPIFLVWIYMMWMVTLFGALLTAALPVVRYERWWHVPSPGAEFIDAVKVLKCLHAAR 310
           VA  PIFLVW+Y+ W++TL GA++TAALP+V+YERWWHVP PG+ F+DA+ ++  L+ AR
Sbjct: 249 VAAFPIFLVWVYLGWLITLAGAVVTAALPIVKYERWWHVPQPGSAFVDAMALIAVLYEAR 308

Query: 311 VGVDSAVVSMEEVRRATKLGLGELQQLLARMSEEGWVASVKPDTRARSGWNRRITDDMDR 370
              DSAVV  + +R  T+LG  E + LL +M + GWVA +K +   R  W +RITD +DR
Sbjct: 309 ASADSAVVDTKLLRDRTQLGFDESEALLEKMLDAGWVARLKSEGPKRMQWGKRITDGLDR 368

Query: 371 WTLAANPGTIQLARVYRLFVFDPAVLAQAGEEETLVTRVEEAINAVLAQSLEEYCQGGRA 430
           W L ANP  + LA VYR+FVFD      AG  E L  +VE A+   L QSL  Y +    
Sbjct: 369 WVLLANPEYLTLADVYRVFVFD------AGGNEMLAKKVECAVEQGLYQSLANYFRESSE 422

Query: 431 ADQAVQE 437
            D   Q 
Sbjct: 423 GDLPGQH 429


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 920,760
Number of extensions: 34043
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 375
Effective length of database: 903,079
Effective search space: 338654625
Effective search space used: 338654625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)