BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3264.p
         (106 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980857|ref|YP_001353868.1| hypothetical protein mma_2178 [...   130   2e-32

>gi|152980857|ref|YP_001353868.1| hypothetical protein mma_2178
           [Janthinobacterium sp. Marseille]
          Length = 105

 Score =  130 bits (327), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 77/104 (74%)

Query: 3   ATLPDRHYASFSEFYPSYLSEHTHRVNRQLHFLGSTLALLSLLLLLLTRQWWWLAVALLC 62
           + +  + Y SF EFY +YL+ H+ R +RQLHFLGSTLA++ L  L LT   WWL  A+L 
Sbjct: 2   SVIAQKTYQSFPEFYAAYLTGHSDRRSRQLHFLGSTLAIIFLTALALTGNVWWLLAAILS 61

Query: 63  GYGLAWVGHFMVEKNQPATFRHPLYSFMGDWVMYWQMLTGQVSF 106
            YGLAW+GHF  EKN+P++ + PLYSF G W+MYWQMLTGQ+SF
Sbjct: 62  FYGLAWIGHFGFEKNRPSSLKQPLYSFAGSWLMYWQMLTGQISF 105


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.138    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 231,914
Number of extensions: 6648
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 36
Effective length of database: 962,231
Effective search space: 34640316
Effective search space used: 34640316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 123 (52.0 bits)