BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3261.p
         (362 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979893|ref|YP_001353864.1| chorismate synthase [Janthinoba...   648   0.0  

>gi|152979893|ref|YP_001353864.1| chorismate synthase
           [Janthinobacterium sp. Marseille]
          Length = 365

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/359 (86%), Positives = 331/359 (92%)

Query: 1   MSGNTLGTLFTVTTFGESHGPAIGCVIDGCPPGMTLSEADIQPELDRRRPGTSRHVTQRQ 60
           MSGNT GTLFTVTTFGESHGPAIGCVIDGCPPGM LSE DIQPELDRR+PGTSRHVTQRQ
Sbjct: 1   MSGNTFGTLFTVTTFGESHGPAIGCVIDGCPPGMVLSEVDIQPELDRRKPGTSRHVTQRQ 60

Query: 61  EPDTVEILSGVYEGKTTGTPIALLIRNQDQRSKDYGNILDTFRPGHADYTYWHKYGIRDP 120
           E DTVEILSGVY+GKTTGTPIALLIRN+DQRSKDYGNI +TFRPGHADYTYWHKYGIRDP
Sbjct: 61  ESDTVEILSGVYQGKTTGTPIALLIRNEDQRSKDYGNITETFRPGHADYTYWHKYGIRDP 120

Query: 121 RGGGRSSARLTAPVVGAAAIAKKWLFEKYGTTFKGCMSQLGEIAIPFESWEHVPNNPFFA 180
           RGGGRSSARLTAPVVGA AIAKKWLFEKYGTTFKGCMSQLG+I IPFE W HV  NPFF+
Sbjct: 121 RGGGRSSARLTAPVVGAGAIAKKWLFEKYGTTFKGCMSQLGDIEIPFEDWRHVTENPFFS 180

Query: 181 ANASLIERLEEYMDALRKDGDSIGARIDVVAQNVPVGLGEPLYDKLDAEIAFALMGINAV 240
           ANAS++ +LE YMD LRK+GDS GARIDVVA+NVPVGLGEP+YDKLDAEIAFALMGINAV
Sbjct: 181 ANASILPQLEAYMDDLRKNGDSCGARIDVVAENVPVGLGEPIYDKLDAEIAFALMGINAV 240

Query: 241 KGVEIGAGFRAVAQKGSEHGDALTPQGFVGNNAGGILGGISTGQDITASIAIKPTSSIRT 300
           KGVEIGAGF++VAQKG+EHGD LTP+GF  N++GGILGGISTGQ+ITASIAIKPTSSIRT
Sbjct: 241 KGVEIGAGFKSVAQKGTEHGDELTPEGFATNHSGGILGGISTGQNITASIAIKPTSSIRT 300

Query: 301 PRPSIDKNGQQISVETFGRHDPCVGIRATPIAEAMLALVLMDHALRHRAQCGDVKVDTP 359
            R SIDK G  + VET GRHDPCVGIRATPIAE+MLALVLMDHALRHRAQCGDV V  P
Sbjct: 301 ARHSIDKAGNPVMVETLGRHDPCVGIRATPIAESMLALVLMDHALRHRAQCGDVVVTPP 359


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 913,159
Number of extensions: 40915
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 278
Effective length of database: 910,473
Effective search space: 253111494
Effective search space used: 253111494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)