BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3260.p
         (273 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981845|ref|YP_001353863.1| hypothetical protein mma_2173 [...   376   e-106
gi|152981277|ref|YP_001354543.1| M48 family peptidase [Janthinob...    70   1e-13

>gi|152981845|ref|YP_001353863.1| hypothetical protein mma_2173
           [Janthinobacterium sp. Marseille]
          Length = 272

 Score =  376 bits (966), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/272 (67%), Positives = 226/272 (83%)

Query: 1   MKLNPIIKNSLLAAALVGLVACETVQTTQGGAVGIDRKQQMLVSSAEMEAASSKEYAQVL 60
           MK +  + +  +A+  + L ACETVQTTQGGAVG+DR+Q+M++S+ E++ A+SK+Y+++L
Sbjct: 1   MKRHSFLSSIAIASVALMLSACETVQTTQGGAVGVDRQQRMMISAQELDQAASKQYSELL 60

Query: 61  AEARSKGQLNRNTAQVQRVRAIANRLIPQTGVFRPDALKWNWEVNVLSSDETNAWCMPGG 120
           AE + KG LNR  AQV+RVR I+NRLI QTGVFRPDA  W WEVNVL+S E NAWCMPGG
Sbjct: 61  AEEKQKGNLNRTPAQVERVRTISNRLIAQTGVFRPDARNWRWEVNVLTSSEVNAWCMPGG 120

Query: 121 KIAVYTGLIDKLKITDDELAAVMGHEIAHALREHARERASQQVVANSAISIGAALLGLGD 180
           KIAVYTGLI+KL +TDDELAAV+GHEIAHALREHARERAS+Q VA S ISIG+ALLG+G 
Sbjct: 121 KIAVYTGLIEKLNVTDDELAAVIGHEIAHALREHARERASEQKVAGSFISIGSALLGVGG 180

Query: 181 VGKQGGQYLYMGLMGLPNSRANETEADRIGVELAARGGYDPKAAVTLWQKMASLGGDEPI 240
           +G+QG ++ YMGL+GLPNSR++ETEADRIGVELAAR GYDP+AAVTLWQKM  +      
Sbjct: 181 LGQQGAEFAYMGLIGLPNSRSHETEADRIGVELAARAGYDPRAAVTLWQKMGKVSSGSTP 240

Query: 241 KFMSTHPSSSERIADLTVYAQRVEPLYQQTRK 272
            F+STHPS S RI+DLTVY+ RV PLYQQ +K
Sbjct: 241 AFLSTHPSGSARISDLTVYSDRVMPLYQQAKK 272


>gi|152981277|ref|YP_001354543.1| M48 family peptidase
           [Janthinobacterium sp. Marseille]
          Length = 524

 Score = 70.5 bits (171), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 24/194 (12%)

Query: 94  RPDA---LKWNWEVNVLSSDETNAWCMPGGKIAVYTGLIDKLKITDDELAAVMGHEIAHA 150
           RP+A    ++++    +     NA+ +PGG I V++ L+   +  + ELA+VM HEI H 
Sbjct: 105 RPEARGEAQYDFFFFAVRDPMLNAFALPGGFIGVHSALVLAAQ-NESELASVMAHEIGHV 163

Query: 151 LREH-ARERASQQVVANSAISIGAALLGLGDVGK--QGGQYLYMGLMGLP------NSRA 201
            + H AR    Q+   +  I + + +LG   +      G  + MG  GL        SR 
Sbjct: 164 AQRHIARMLGKQK--QDMLIPLASMILGALAISSSPDAGMAMIMGGQGLAIQRQLNFSRD 221

Query: 202 NETEADRIGVELAARGGYDPKAAVTLWQKMASLG---GDEPIKFMSTHPSSSERIADLTV 258
            E EADR+G+++    G++    +  + ++ +      D    ++ +HP ++ERIAD+  
Sbjct: 222 AEREADRVGLDIMREAGFETTGMINFFGRLQTASRNYSDNAPPYLRSHPMTTERIADIQA 281

Query: 259 ------YAQRVEPL 266
                 Y Q V+ L
Sbjct: 282 RTRDLRYRQHVDSL 295


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 483,850
Number of extensions: 15870
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 273
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 191
Effective length of database: 917,867
Effective search space: 175312597
Effective search space used: 175312597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)