BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3258.p
         (215 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980134|ref|YP_001353860.1| 3-isopropylmalate dehydratase s...   389   e-110
gi|152980072|ref|YP_001354034.1| 3-isopropylmalate dehydratase s...   152   2e-38

>gi|152980134|ref|YP_001353860.1| 3-isopropylmalate dehydratase
           small subunit [Janthinobacterium sp. Marseille]
          Length = 215

 Score =  389 bits (999), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 179/215 (83%), Positives = 196/215 (91%)

Query: 1   MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60
           M+KF +  GLVAPLDRANVDTDAIIPKQFLKSIKR+GFGPNLFDEWRYLD GEPG DNS 
Sbjct: 1   MDKFTILNGLVAPLDRANVDTDAIIPKQFLKSIKRTGFGPNLFDEWRYLDQGEPGKDNSN 60

Query: 61  RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 120
           RPLNPDFVLNQ RYQG+SILL+RKNFGCGSSREHAPWAL QYGFRA++APSFADIFFNNC
Sbjct: 61  RPLNPDFVLNQSRYQGASILLARKNFGCGSSREHAPWALSQYGFRAIVAPSFADIFFNNC 120

Query: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQVYPFDISEFRKYCL 180
           YKNGLLP+ L+E QVDHLFNEVKAFPG+ LVIDLEKQ++ T+NGS  YPF+I  FRKYCL
Sbjct: 121 YKNGLLPVALSEAQVDHLFNEVKAFPGFHLVIDLEKQVIGTSNGSVTYPFEIDAFRKYCL 180

Query: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 215
           LNGFDDIGLTL+KAD IRA+EE+HL  QPWLSNTI
Sbjct: 181 LNGFDDIGLTLQKADKIRAFEERHLAAQPWLSNTI 215


>gi|152980072|ref|YP_001354034.1| 3-isopropylmalate dehydratase
           small subunit [Janthinobacterium sp. Marseille]
          Length = 205

 Score =  152 bits (383), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/210 (38%), Positives = 120/210 (57%), Gaps = 12/210 (5%)

Query: 1   MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60
           M+   + +G+ APL  AN+DTD I+PKQFL+ I ++G    +  + R+   G P      
Sbjct: 1   MSDQTLLQGVAAPLLLANLDTDQIMPKQFLRIIDKAGLAKGVLYDLRFHPDGSP------ 54

Query: 61  RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 120
               PDF+LNQ  +  S  L+   NFGCGSSREHA W L Q G  A+IAPSF +IFF N 
Sbjct: 55  ---RPDFILNQPAFSNSKFLIGGPNFGCGSSREHAVWGLQQLGIEAIIAPSFGEIFFGNA 111

Query: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQVYPFDISEFRKYCL 180
             N LL I+L ++++  L +++++  G +L IDL    VS+ + S  +PF ++   +  +
Sbjct: 112 LNNRLLLIMLEQEKIAVLLDDMES-SGMQLQIDLNAMTVSSASHS--FPFTLAARHRKMI 168

Query: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPW 210
           + G D IG T++    I  +E+ H    PW
Sbjct: 169 VEGLDMIGATMQLLPEIERFEQSHDARFPW 198


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 531,616
Number of extensions: 21989
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 215
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 136
Effective length of database: 928,958
Effective search space: 126338288
Effective search space used: 126338288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)