BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3254.p
         (902 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980860|ref|YP_001353857.1| FimV type IV pilus assembly pro...   200   3e-52

>gi|152980860|ref|YP_001353857.1| FimV type IV pilus assembly
           protein [Janthinobacterium sp. Marseille]
          Length = 944

 Score =  200 bits (509), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/197 (55%), Positives = 148/197 (75%), Gaps = 8/197 (4%)

Query: 296 EYRVKPGDTLAGIATRNQPANVSLDQMLIALYRANPDAFQGNNINRLRAGKILAIPDQPS 355
           EY+VK GDTLA IA + +P+ VSLDQML+ALYRANP+AF   N+NRLRAG+IL++P+  +
Sbjct: 226 EYQVKKGDTLAKIANQYRPSGVSLDQMLVALYRANPEAFIDKNMNRLRAGQILSVPEADA 285

Query: 356 AAAVDRDEARSMVVAQAQDFNAYRNKLAGQVANAPAGKPGSSRHSGGGKITTRVEERAG- 414
           A AV + +AR +V+AQA DFNAYRNKLAGQVANA A K   ++ + GGKIT +V++ AG 
Sbjct: 286 AQAVAQSDARGVVIAQAADFNAYRNKLAGQVANAAAKKSDDAKQADGGKITAKVQDEAGA 345

Query: 415 NQDARDRLELSR---ANKGRGKTGNTGTAAEDKAASERALAEANDRVKDLEKNVDNLQKL 471
             +A+D+L+LS+   A  G  K  N    AE+  A ++A+A+AN RVK+LEKNV+ LQK+
Sbjct: 346 AAEAKDKLKLSKSGAAATGSDKLANQA-GAEELIAKDKAIADANARVKELEKNVNELQKI 404

Query: 472 LELKNKTIAEMSAQQQK 488
           LE+KNK +A   AQQ++
Sbjct: 405 LEIKNKDLA---AQQKQ 418



 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 117/168 (69%), Gaps = 1/168 (0%)

Query: 1   MPVNTNKKLPRSQMKNLSAAIALTLALPLGAHAAGLGKLTVLSALGQPLRAEIEVTSVSA 60
           M  N        ++K LSAA+   L L   A+AAGLGKLTV+S+LGQPLRAEIE+TSV+ 
Sbjct: 5   MRSNPGSTFSSFKLKTLSAAVISALVLS-NAYAAGLGKLTVMSSLGQPLRAEIELTSVAP 63

Query: 61  EEAGKLTARLAPAEAFRRANMDYNPVLSSLSFVIEQRQGRHFIRISSSQPVSDPFVDLLL 120
           +E   L  +LA AEAFR+AN+D+NP L SL F +EQR G+  +RI+S+QP+++PFVD+LL
Sbjct: 64  DELASLAPKLASAEAFRQANIDFNPSLFSLRFAVEQRGGQPIVRITSTQPINEPFVDMLL 123

Query: 121 ELSAGNARQMREYTFLLDPADSKTPRNAQVAPLTPGNAPAATTPAAAP 168
           EL     R +REYTFLLDP + ++ ++AQVAP+     PAA    + P
Sbjct: 124 ELGGNKGRLVREYTFLLDPPEMRSAQSAQVAPIAITAPPAARVVESRP 171



 Score =  145 bits (367), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 134/382 (35%), Positives = 178/382 (46%), Gaps = 111/382 (29%)

Query: 626 VAEAEPVAAAAPVEEAPVDPIAEADMYIAYGRDEQAEDILKLALQTQPERQALHSKLLEI 685
           V  +  V +A+ ++   VDPIAEAD+YIAYGRD QAE+ILK AL+ QP+R A+  KLLEI
Sbjct: 567 VFNSNFVPSASQLDTNEVDPIAEADVYIAYGRDAQAEEILKEALRNQPDRHAVRVKLLEI 626

Query: 686 YAKRGDVANFNRVALNLHALSGGLNEAWVKAAALGLELD--------------------- 724
           Y+ R DV +F  +A  L++++ G  + W +AA +GL LD                     
Sbjct: 627 YSSRNDVRSFEILATELYSMTKGEGDDWAQAATMGLILDPSNPLYANGAVPEDVAAKASA 686

Query: 725 ---PTNPLYG------------------------------------GTP-AEPEPVVAEE 744
              PT PL G                                     TP AEP+ VV + 
Sbjct: 687 MTAPTQPLDGLDDLRGIAPVAAGAAALGTAAYFASNNSEAEAEEPAYTPEAEPKAVVED- 745

Query: 745 PGMEFDLSDFKGAELQPEPVATAAAAAAPMDLGKD---IDFDLDLENGAKP--------- 792
             ++FDL    G E   +    A  AA P +   D   IDFD   +  A P         
Sbjct: 746 --LDFDLEGL-GIEKTADAEKPAEDAAVPAEFPADVAAIDFDFLDDKSAAPAAKSGNTLQ 802

Query: 793 ----DASEPILPASS--GATSASMLLDSMD-DVP----AATS------------LSDLDL 829
               +AS P +PA++   AT   +L D ++ D P    AA S            LSD+ L
Sbjct: 803 FFDSEASAPTVPAANTPAATPDFLLPDDIELDFPEHDAAAFSATQPMANLPEFDLSDIAL 862

Query: 830 SL----------PEESTAPSATNLLEEDEESAFEQEMTTKLDLAAAYEEIGDKEGARELL 879
            L            E+  P    L +E   SA   EM TKLDLA AY+EIGD+EGARELL
Sbjct: 863 ELDPVDKPAVQGEAETALPELDGLGDEASYSA-NAEMATKLDLAIAYQEIGDREGARELL 921

Query: 880 EEVMRGGNDAQIARAKQMMAAL 901
           EEV++GGN  Q  +AK ++  L
Sbjct: 922 EEVLKGGNGEQSEKAKALLGKL 943


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.308    0.124    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,348,592
Number of extensions: 43807
Number of successful extensions: 235
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 5
Length of query: 902
Length of database: 1,221,021
Length adjustment: 92
Effective length of query: 810
Effective length of database: 880,897
Effective search space: 713526570
Effective search space used: 713526570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 134 (56.2 bits)