BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3249.p
         (289 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980197|ref|YP_001353852.1| acetyl-CoA carboxylase subunit ...   540   e-155

>gi|152980197|ref|YP_001353852.1| acetyl-CoA carboxylase subunit
           beta [Janthinobacterium sp. Marseille]
          Length = 290

 Score =  540 bits (1390), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 258/290 (88%), Positives = 276/290 (95%), Gaps = 1/290 (0%)

Query: 1   MSWLEKLLPPQIQRGSTS-RKAIPEGLWVKCPSCEAVLYRTDLESNLHVCPKCSHHMRIR 59
           MSWLEKLLPP+IQR   + RK+IPEGLWVKCPSCEAVLYRTDLESN+HVCPKC HHMRIR
Sbjct: 1   MSWLEKLLPPRIQRSDAAQRKSIPEGLWVKCPSCEAVLYRTDLESNIHVCPKCDHHMRIR 60

Query: 60  ARARLDALLDEGGRYEIGQEALPVDTLKFKDSKKYPDRLKDAMESTGETDAMVVMGGAIM 119
           AR RLDALLD GGRY+IGQE LPVDTLKFKDSKKYPDRLK A+E+TGETDA+VV+GG+IM
Sbjct: 61  ARDRLDALLDAGGRYDIGQEVLPVDTLKFKDSKKYPDRLKSALEATGETDALVVLGGSIM 120

Query: 120 TLPVVVACFEFEFMGGSMGSVVGERFVRGAQAALEQKVPFICITATGGARMQEGLLSLMQ 179
           +LPVVVACFEFEFMGGSMGSVVGERF RGAQ ALEQKVPFICITATGGARMQEGLLSLMQ
Sbjct: 121 SLPVVVACFEFEFMGGSMGSVVGERFARGAQTALEQKVPFICITATGGARMQEGLLSLMQ 180

Query: 180 MAKTTAMLTKLAEKKLPFISVLTDPTMGGVSASFAFMGDVVMAEPRALIGFAGPRVIENT 239
           MAKTT+MLTKLAEKKLPFISVLTDPTMGGVSASFAFMGDVV+AEP+ALIGFAGPRVIENT
Sbjct: 181 MAKTTSMLTKLAEKKLPFISVLTDPTMGGVSASFAFMGDVVIAEPKALIGFAGPRVIENT 240

Query: 240 VREKLPEGFQRAEFLVTKGAIDMIVDRRKMREEIAHLLALLQNQAAETVS 289
           VREKLPEGFQRAEFLV KGA+DMIVDRRKMREEIA +LALLQNQAAE ++
Sbjct: 241 VREKLPEGFQRAEFLVQKGAVDMIVDRRKMREEIARILALLQNQAAEVLA 290


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 598,029
Number of extensions: 22212
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 207
Effective length of database: 917,867
Effective search space: 189998469
Effective search space used: 189998469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)