BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3247.p
         (333 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980864|ref|YP_001353850.1| sporulation related protein [Ja...   216   1e-57

>gi|152980864|ref|YP_001353850.1| sporulation related protein
           [Janthinobacterium sp. Marseille]
          Length = 282

 Score =  216 bits (551), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 151/344 (43%), Positives = 194/344 (56%), Gaps = 75/344 (21%)

Query: 1   MGLFSLFRKNKQDSASDQGTFRSRADEQSSVIRSRNSRSTANGSGRAASGRAKAG---KD 57
           MGLFS  RKN+Q+S+  +  F S+ADE+                 + A G+ K G   ++
Sbjct: 1   MGLFSFLRKNQQESSVGKSDFYSQADEE-----------------KPARGKRKQGNRREE 43

Query: 58  AADPLLPEKKRARRRLIGAVALALAVVIVLPMILDSEPKPLNEDIAIQIPSKDAPV---- 113
             DP+LPEKKRARRRL+GA+AL LA VI LPMILDSEP+ L +DI IQIPSKD P     
Sbjct: 44  PVDPVLPEKKRARRRLVGAIALVLAAVIGLPMILDSEPRQLPDDIDIQIPSKDTPAPAAQ 103

Query: 114 --ADMTQPGRSDPKQASLDQKEEIVEPASIAPEPASPTPTPTPTPTPAPAAAQPETP--P 169
             A +     +   + +L  +EEIVEP +                 PAP  A  ETP   
Sbjct: 104 AKAGLVAKADTSAARNALSAEEEIVEPEA-----------------PAPVVAPKETPKET 146

Query: 170 VAVTPKVVEKPVEKPVEKHQEKSTEKPTEKSAAKTEHKEEPKREEPKKEAAKPKAPAATD 229
           V   PK+ E                  TEK A     K  P+  EPK   A P AP+ + 
Sbjct: 147 VKAEPKLAE------------------TEKKAPVASVK--PEAAEPK---AAPHAPSVSK 183

Query: 230 -DDAARALAILEGKSGAAAAPAEKKPAAAGGKFVIQVAALATQDKVNELRNKLSAAGIHS 288
            D+AARA AILEGK+ ++A P       A GK V+QVAALA+QDKVNEL+ KL AAG+ S
Sbjct: 184 ADEAARARAILEGKTVSSATPH------ASGKVVLQVAALASQDKVNELQKKLQAAGLKS 237

Query: 289 YTQKIATQAGDRTRIRVGPFASREEAERMGGRIKKLGLNATIVP 332
           YTQK+AT++G+R R+RVGPFA+  EAE+   ++ K+GL    VP
Sbjct: 238 YTQKVATESGERIRVRVGPFANEAEAEKARAKLTKIGLTGKSVP 281


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.307    0.124    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 367,221
Number of extensions: 9122
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 249
Effective length of database: 910,473
Effective search space: 226707777
Effective search space used: 226707777
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 130 (54.7 bits)