BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3246.p
         (166 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980863|ref|YP_001353849.1| colicin V production transmembr...   183   4e-48

>gi|152980863|ref|YP_001353849.1| colicin V production transmembrane
           protein [Janthinobacterium sp. Marseille]
          Length = 162

 Score =  183 bits (465), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 119/162 (73%)

Query: 1   VTIFDYLVLLILACSVIIGTLRGFVREVLSLAGWIVALVVANTYGEALSAMLPDVVPGEL 60
           +TIFDYLVL +L CSV+I TLRG V+E+LSL  WIVA  VAN YGE L+  LP++VPG+ 
Sbjct: 1   MTIFDYLVLFVLICSVVISTLRGLVKEILSLLSWIVAFFVANAYGETLAQWLPEMVPGKT 60

Query: 61  TRLIVAFIALFIGTRLLVALVAKTLGELVKATGLGFLDRTLGSVFGVARGVLLVVAVALL 120
            RLIVAFI LFIG R+L+ L+   L  ++KA+GL   DR LG +FG+ARG+L+V+A  LL
Sbjct: 61  ARLIVAFIVLFIGVRILMGLLTMALDAVIKASGLTLADRGLGGLFGLARGLLIVLAAVLL 120

Query: 121 CGTTEIPRQPFWTQARFSPWVVQAAQAVLPYLPGKLAEHVSF 162
           CG T IP+QPFW  A FSP    AA  V P+LPG+ A+H+ F
Sbjct: 121 CGMTAIPQQPFWKNALFSPLAETAAHTVKPFLPGEFAQHIEF 162


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.143    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 337,404
Number of extensions: 11305
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 89
Effective length of database: 936,352
Effective search space: 83335328
Effective search space used: 83335328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)