BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3244.p
         (413 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980865|ref|YP_001353847.1| hypothetical protein mma_2157 [...   738   0.0  
gi|152980133|ref|YP_001353090.1| cystathionine beta-lyase [Janth...   125   5e-30

>gi|152980865|ref|YP_001353847.1| hypothetical protein mma_2157
           [Janthinobacterium sp. Marseille]
          Length = 413

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/413 (83%), Positives = 379/413 (91%)

Query: 1   MNDKKTYGFTTTILHSDRQKGIEHGSLHKPIHTSVTFGYEDARQLAEVFQGKQPGYRYGR 60
           M D K YGFTTT LHSDRQK IEHGSLHKPIHTSVTFGY DAR+LA VFQGK+PGYRYGR
Sbjct: 1   MTDSKKYGFTTTTLHSDRQKAIEHGSLHKPIHTSVTFGYNDARELATVFQGKKPGYRYGR 60

Query: 61  QGNPTVSALEDKITKMEDGKSTICFATGMAAIGAIVQGLLREGDHVVSSAFLFGNTNSLW 120
           QGNPTV+ALEDK+ KME+G STICFATGMAAIGA+VQ LLREGDHVVSSAFLFGNTNSLW
Sbjct: 61  QGNPTVAALEDKVNKMEEGLSTICFATGMAAIGAVVQALLREGDHVVSSAFLFGNTNSLW 120

Query: 121 MTVGAQGAKVSMVDATDVKNVEAAITPNTRLVFVETIANPRTQVADLKRIGELCRQRGIL 180
            TVG QG +++MVDATDVKNVEAAI PNT +VFVETIANPRTQVADL RIG+LC +RGIL
Sbjct: 121 QTVGGQGVQIAMVDATDVKNVEAAIQPNTCIVFVETIANPRTQVADLARIGKLCAERGIL 180

Query: 181 YVVDNTMTSPYLFRPKTVGAGLVVNSLTKSIGGHGNALGGALTDTGEYDWTRYPHIADNY 240
           YVVDNTMTSPYLFRPKTVGA +V+N+LTKSIGGHGNALGG+LTDTG YDW R+P+I + Y
Sbjct: 181 YVVDNTMTSPYLFRPKTVGASIVINALTKSIGGHGNALGGSLTDTGLYDWARFPNILETY 240

Query: 241 KKNPPAQWAMAQIRAKALRDFGGSLGPEAAHHIAVGAETIALRLDRECQNALALAQMLQA 300
           K+ P AQW MAQIRAKALRDFGGSLGPEAAHH+AVGAET+ALRLDREC NALA+AQML+A
Sbjct: 241 KRYPTAQWGMAQIRAKALRDFGGSLGPEAAHHLAVGAETMALRLDRECANALAVAQMLEA 300

Query: 301 DPRVAAVHYPGLESHPQHALCKQLFRSFGSLMSFELKDSIDCFDYLNRLNLAVAASNLGD 360
           D RVAAV+YPGL+SHPQHA+  +LFR++GSL SFELKD IDCFDYLNRL L V+ASNLGD
Sbjct: 301 DERVAAVYYPGLKSHPQHAISTELFRAYGSLFSFELKDGIDCFDYLNRLQLGVSASNLGD 360

Query: 361 TRTLVIPVAHTIFYEMGAERRASMGIAESLIRVSVGLEDTDDLVQDFRQALDA 413
           TRTLVIPVAHTIFYEMGAERRASMGIAESLIRVS+G+EDT DLV+DFRQALDA
Sbjct: 361 TRTLVIPVAHTIFYEMGAERRASMGIAESLIRVSIGIEDTADLVEDFRQALDA 413


>gi|152980133|ref|YP_001353090.1| cystathionine beta-lyase
           [Janthinobacterium sp. Marseille]
          Length = 380

 Score =  125 bits (314), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 172/406 (42%), Gaps = 34/406 (8%)

Query: 13  ILHSDRQKGIEHGSLHKPIHTSVTFGYEDARQLAEVFQGKQPGYRYGRQGNPTVSALEDK 72
           ++H+D +      +L + IH + T  ++D   +       +  Y YG  G PT   LE +
Sbjct: 1   MIHNDYRAPDGFSALPQAIHHASTVLFKDVASMRSRNWQDKNAYTYGLHGTPTTFTLEAR 60

Query: 73  ITKMEDGKSTICFATGMAAIGAIVQGLLREGDHVVSSAFLFGNTNSL--WMTVGAQGAKV 130
           +  +EDGK  +   +G+AAI  +    L+ GD V+    ++     L  W+     G   
Sbjct: 61  LAAIEDGKHCVLAPSGLAAIALVDFAFLKSGDDVLIPDNVYNPNRELANWLQQDF-GITA 119

Query: 131 SMVDATDVKNVEAAITPNTRLVFVETIANPRTQVADLKRIGELCRQRGILYVVDNTMTSP 190
              D      +   I PNTRL++ E   +   +V DL  I +    +G+L  +DNT  + 
Sbjct: 120 RYYDPLIGSGISGLIQPNTRLIWTEAPGSVSMEVPDLPAICQAAHAKGVLVALDNTWAAG 179

Query: 191 YLFRPKTVGAGLVVNSLTKSIGGHGNALGGALTDTGEYDWTRYPHIADNYKKNPPAQWAM 250
              R   +G  +++ +LTK   G  + L GA+    +                     A+
Sbjct: 180 LALRGFELGVDIIMQALTKYQSGGSDVLMGAVITQDK---------------------AL 218

Query: 251 AQIRAKALRDFGGSLGPEAAHHIAVGAETIALRLDRECQNALALAQMLQADPRVAAVHYP 310
            Q    A    G  +  +  + +     T+ LR +     A  +A  LQA P +AAV +P
Sbjct: 219 NQRLETAHMRLGFGVAADDVYLVLRSLPTMKLRFEAHDAAARTVAAWLQARPEIAAVLHP 278

Query: 311 GLESHPQHALCKQLFRSFGSLMS--FELKDSIDCFD-YLNRLNLAVAASNLGDTRTLVIP 367
            L   P HA+ ++ F   G L S  F+ + S    D +++ L L     + G   +L +P
Sbjct: 279 ALPECPGHAIWQRDFSGAGGLFSVVFDPRYSEAQTDRFVDSLQLFKIGFSWGGVHSLAVP 338

Query: 368 VAHTIFYEMGAERRASMGIAESLIRVSVGLEDTDDLVQDFRQALDA 413
                 Y M    R +      L+R+++GLED  DL+ D  QA  A
Sbjct: 339 ------YRM-QHMRGNWPHQGQLVRLNIGLEDPQDLIADIEQAFKA 377


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 960,495
Number of extensions: 39188
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 413
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 327
Effective length of database: 903,079
Effective search space: 295306833
Effective search space used: 295306833
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)