BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3240.p
         (280 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981327|ref|YP_001352967.1| hypothetical protein mma_1277 [...   378   e-106

>gi|152981327|ref|YP_001352967.1| hypothetical protein mma_1277
           [Janthinobacterium sp. Marseille]
          Length = 278

 Score =  378 bits (970), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/275 (71%), Positives = 224/275 (81%)

Query: 4   LKFDLHCHSNVSDGLLSPEEVAARAKANGVDVWALTDHDEVGGVARARAAAHALGMKHVA 63
           L  DLHCHSN SDG L+P  +AARAKANGVDVWA+TDHDEVGG+A ARAAA AL +  VA
Sbjct: 2   LNADLHCHSNFSDGTLTPTALAARAKANGVDVWAMTDHDEVGGLAEARAAAAALDLPFVA 61

Query: 64  GVEISVTWAGHTVHVVGLRIDENNRALVEGLAATRNGRERRAREIAAALEQHGIGGAYEG 123
           GVEIS+TW+G TVH+VGL+IDE N  LV GLA TR GRE RAREIAA LE+ GI GAYEG
Sbjct: 62  GVEISITWSGQTVHIVGLQIDETNETLVNGLATTRGGREPRAREIAAQLEKIGIKGAYEG 121

Query: 124 ALQHVGNPDLISRTHFARYLVECGHCCDTKEVFANYLTEGKPGYVPHRWATLEEAVRWIR 183
           AL+ V NPDLISRTHFARY++E G C +  +VFANYL EGKPG+VPHRWA+L+ +V WIR
Sbjct: 122 ALKFVDNPDLISRTHFARYIIELGLCDNLHDVFANYLGEGKPGFVPHRWASLQNSVEWIR 181

Query: 184 GAGGVAVIAHPGRYKYTQTQFGALFDEFRQLGGAAIEVNTGSHTPEQYQQYAQVARSYGF 243
            AGG+AVIAHPGRYK+T   F ALF EF+  GG  IEV TGSHT +QY  YA+VA+ Y F
Sbjct: 182 AAGGIAVIAHPGRYKFTDLAFDALFKEFKSFGGVGIEVTTGSHTVDQYDFYAKVAKDYDF 241

Query: 244 LGSMGSDFHGPGESRLDLGELPPLPVGVKPVWHDW 278
           L S GSDFHGPGESR+DLG LPPLP+GVKPVWH+W
Sbjct: 242 LASRGSDFHGPGESRVDLGGLPPLPLGVKPVWHNW 276


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 692,321
Number of extensions: 26927
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 198
Effective length of database: 917,867
Effective search space: 181737666
Effective search space used: 181737666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)