BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3239.p
         (291 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980711|ref|YP_001352968.1| heat shock protein HtpX [Janthi...   476   e-136
gi|152982799|ref|YP_001351899.1| Zn-dependent protease with chap...    77   2e-15

>gi|152980711|ref|YP_001352968.1| heat shock protein HtpX
           [Janthinobacterium sp. Marseille]
          Length = 290

 Score =  476 bits (1225), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/288 (80%), Positives = 259/288 (89%), Gaps = 1/288 (0%)

Query: 1   MKRILLFIATNIAVLVVMSVILSLLGVDRFLTRSGLNLPMLLVFSLVVGFTGSIISLLMS 60
           MKRI LFIATNIAV+ VMSV+LSLLGVDRF++++GLNLPMLLVFSLVVGFTGSIISLL+S
Sbjct: 1   MKRIFLFIATNIAVIAVMSVVLSLLGVDRFISQAGLNLPMLLVFSLVVGFTGSIISLLIS 60

Query: 61  KSMAKWSTGARVIDTPMNGTEAWLLQTVGKLAQRAGIGMPEVAVYDGEPNAFATGAFRDS 120
           K MAKWSTGARVID P + TE WL+ TV KLAQRAGI MPEVAVYDGEPNAFATGAFRDS
Sbjct: 61  KPMAKWSTGARVIDAPSSSTELWLIDTVSKLAQRAGIKMPEVAVYDGEPNAFATGAFRDS 120

Query: 121 ALVAVSTGLLQGMTQEEVEAVLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVGYFVD 180
           ALVAVSTGLLQ MT++EVEAVL HEVAH+ANGDMVTMTL+QGVVNTFVVFLSRVVGYFVD
Sbjct: 121 ALVAVSTGLLQSMTKDEVEAVLAHEVAHVANGDMVTMTLVQGVVNTFVVFLSRVVGYFVD 180

Query: 181 SALRRNNDESGPGIGYMVTVMVCQIVFGIGASIIVAWFSRHREFRADAGAARLLGTPQPM 240
            A+ R+N+ S  GIGY +TV+V QIVFGI AS+IVAWFSRHREFRADAGAA+LLG+PQPM
Sbjct: 181 RAISRDNNNS-QGIGYTITVIVSQIVFGIAASVIVAWFSRHREFRADAGAAKLLGSPQPM 239

Query: 241 INALARLGGFSPEGLPQNMAALGISDKPGFMELFSTHPPLEQRIAALR 288
           + ALARLGG  P  LP+ +A+LGI+DKPGF  LFS+HPP+E RIAALR
Sbjct: 240 MKALARLGGIEPTSLPEGLASLGINDKPGFAALFSSHPPIEDRIAALR 287


>gi|152982799|ref|YP_001351899.1| Zn-dependent protease with
           chaperone function [Janthinobacterium sp. Marseille]
          Length = 659

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 124/258 (48%), Gaps = 33/258 (12%)

Query: 61  KSMAKWSTGARVIDTPMNGTEAWLLQTVGKLAQRAGIGMPEVAVYDGEP--NAFATGAFR 118
            ++A+   G +V  + ++  E  LL  V ++A  +GI  P V +   E   NAFA G   
Sbjct: 86  DAVARMVGGRQVSLSTIDLQERRLLNIVEEMAVASGIACPRVYLLAKEESINAFAAGYNP 145

Query: 119 DSALVAVSTGLLQGMTQEEVEAVLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVGYF 178
           + A+V ++ G L  +T++E++ V+ HE +HI NGDM     + GV  TF +    +VG F
Sbjct: 146 NEAVVVLTQGALTRLTRDELQGVIAHEFSHILNGDMRLNLKLLGV--TFGI---EMVGDF 200

Query: 179 VDSALR---RNNDESGPGIGYMVTVMVCQIVFGIGASII--VAWF---------SRHREF 224
              A+     ++D+        V  ++   +FGI   +I  +  F         SR RE+
Sbjct: 201 GRQAMEFAWYSSDDIEANFKLTVFRIIA-FIFGIAFFVIGYIGLFFGRVIKFAVSRQREY 259

Query: 225 RADAGAARLLGTPQPMINALARLGGFSPEGLP---------QNMAALGISD-KPGFME-L 273
            ADA A +       + NAL ++   S +G           + ++ L +S  +P  M   
Sbjct: 260 LADASAIQFTRNADGLGNALRKIAVLSDKGFSGAYIGHRNAEQLSHLFVSAVRPHLMAGF 319

Query: 274 FSTHPPLEQRIAALRGQR 291
           F+THPPL++R+  + G+ 
Sbjct: 320 FATHPPLQERLRRIYGRE 337


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 666,050
Number of extensions: 28613
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 291
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 209
Effective length of database: 917,867
Effective search space: 191834203
Effective search space used: 191834203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)