BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3236.p
         (399 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979774|ref|YP_001352535.1| tryptophanyl-tRNA synthetase II...   153   2e-38

>gi|152979774|ref|YP_001352535.1| tryptophanyl-tRNA synthetase II
           [Janthinobacterium sp. Marseille]
          Length = 344

 Score =  153 bits (386), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 188/397 (47%), Gaps = 73/397 (18%)

Query: 6   VVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETSTWEMV 65
           V++G RPTG LHLGHY G+LK+ ++LQ        +AD  A+T +      +  +  E+ 
Sbjct: 16  VLTGDRPTGPLHLGHYIGSLKSRLELQDTHKQFILLADTQAMTDNVGRHQRVTENVLEVA 75

Query: 66  IDWLAAGVDPSQATLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQ-QEKLADRDLA 124
           +D+LA G+DP ++T+FIQS++PE  EL ++L     +  LER PT K++ + +  +RD+ 
Sbjct: 76  LDYLAVGIDPEKSTIFIQSQIPELYELSMVLLNLVTVSRLERNPTIKEEIRLRNFERDIP 135

Query: 125 TYGFLGYPLLQAADVLIYRASQVPVGEDQVPHIEIMREIARRFNHLYGKEKGFE-EKALA 183
             GFL YP+ QAAD+  ++A+ VPVG DQ+P IE   E+ R+FN + GK+   E ++ L+
Sbjct: 136 A-GFLTYPVSQAADITAFKATLVPVGNDQLPMIEQTNELVRKFNSVVGKDILVECKELLS 194

Query: 184 ATKKLGSKRAKLYLELRTQFQEKGDDEALEQAKAMLDDAQNLSMIDRERLFGYLEGSRKL 243
           AT +L     K  +      +  G+  AL    A +  A N                   
Sbjct: 195 ATSRLPGIDGKAKMS-----KSLGNSIALGATAAEIKKAVN------------------- 230

Query: 244 ILTEPQAMLTEASRLPGLDGAKMSKSYGNAIALREDAATVTKKVKTMPTDPQRVRRSDPG 303
                 AM T+ + L   D  ++    GN +    DA                       
Sbjct: 231 ------AMYTDPNHLKVEDPGQVD---GNVVFSFLDAF---------------------- 259

Query: 304 DPDKCPVWQFHQVYSTPEVKEWAAKGCRSAGIGCLECKQPVIDAILQEQ-QPMLERAQPY 362
           D DK  V +    Y             R  G+G    K+  ++A LQ   +P+  R + Y
Sbjct: 260 DEDKAAVEELKAHY-------------RRGGLGDSVVKRR-LEAQLQAMIEPIRTRREAY 305

Query: 363 LDDPSLVRAIVADGCEKARKLAQDTMRDVREAMGLGY 399
             D   V A++  G E+AR +A  T+ +V  +MGL Y
Sbjct: 306 AQDKGEVLAMLKRGTERARAVAAKTLSEVNASMGLNY 342


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 962,571
Number of extensions: 38928
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 314
Effective length of database: 906,776
Effective search space: 284727664
Effective search space used: 284727664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)