BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3234.p
         (393 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981301|ref|YP_001352973.1| hypothetical protein mma_1283 [...   509   e-145

>gi|152981301|ref|YP_001352973.1| hypothetical protein mma_1283
           [Janthinobacterium sp. Marseille]
          Length = 384

 Score =  509 bits (1310), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 255/383 (66%), Positives = 311/383 (81%), Gaps = 8/383 (2%)

Query: 16  TLTQRSIVVALAL-AGLAGCSSIGNMLEGDRIDYKSAEKARGPRLEVPPDLTQLQRDNRY 74
           +  +R ++  LAL  GLAGCSSI ++LE  RIDYKS E  + P LE+PPDLTQLQR+NRY
Sbjct: 5   SFAKRGMIYLLALTGGLAGCSSINSILEPGRIDYKS-EVKKTPTLEIPPDLTQLQRENRY 63

Query: 75  SIPEANKGVATASGYQLEQQTKPTTDLTSVAPDAQGKDIRIERDGSQRWLVVKQTPEQLW 134
           ++P++N+G ATAS Y  +Q  +PT    +VAP A   DIR+ERDGSQRWLV+ QTPE LW
Sbjct: 64  ALPDSNRGTATASSYNAQQVARPTEQAATVAPKA-FNDIRVERDGSQRWLVINQTPEVLW 122

Query: 135 PQIKDFWQDNGFLINVESPDTGVMETDWAENRAKIPQDFIRNTLGKVFDSLYSTGERDKF 194
           P+IKDFWQDNGFLIN+E+P +GVMETDWAENRAKIPQDFIR+TLGKVFDSLYSTGERDKF
Sbjct: 123 PKIKDFWQDNGFLINLEAPQSGVMETDWAENRAKIPQDFIRSTLGKVFDSLYSTGERDKF 182

Query: 195 RTRLERGPNGTTEIFISHRGAEEVLTGSAKETSVWTARPSDPGLEAEFLSRLMVRLGADA 254
           RTRLERG NGTTE++ISHRGAEEVLTG+ KET+VWTAR SDP LEAEFLSRLMV LGA+ 
Sbjct: 183 RTRLERGANGTTEVYISHRGAEEVLTGTDKETTVWTARASDPDLEAEFLSRLMVSLGAED 242

Query: 255 TKAKAAVANAPSLQARSRLVKTATGTSVQVDEGFDRAWRRIGLALDRVGFTVEDRDRSQG 314
           T+AKAAVAN  +  +R++L+K  +G+ VQVDE F+RAWRR+GLALDRVGFTVEDRDRSQG
Sbjct: 243 TRAKAAVANVVAQSSRAKLIKAPSGSYVQVDESFERAWRRVGLALDRVGFTVEDRDRSQG 302

Query: 315 IYYVRYVDQDQDAKDKKDSGFFSRIF----SSKDKDKKAAKYRIVVKGAGSDSSNIVVQN 370
           +Y+VRYVDQ  DAK+ +  GFF+ +F    S  DKDK AA+YR+ +K +G D+S I V N
Sbjct: 303 LYFVRYVDQGDDAKNTEKKGFFANLFTFGSSKADKDKAAARYRVAIKSSG-DTSQITVLN 361

Query: 371 GEGGPDTSGISDKILGLLNDQLK 393
            +G  ++S   ++IL LLN+QLK
Sbjct: 362 SDGKLESSKTGERILSLLNEQLK 384


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 825,494
Number of extensions: 30996
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 308
Effective length of database: 906,776
Effective search space: 279287008
Effective search space used: 279287008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 130 (54.7 bits)