BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3233.p
         (261 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981637|ref|YP_001352974.1| metallo-beta-lactamase superfam...   362   e-101

>gi|152981637|ref|YP_001352974.1| metallo-beta-lactamase superfamily
           protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score =  362 bits (928), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/261 (65%), Positives = 210/261 (80%), Gaps = 5/261 (1%)

Query: 1   MKFASLGSGSEGNALLISAAAGDSRPSSGTTVMLDCGFTLREAEKRMLRLGLDPSDVSAI 60
           MKFASLGSGSEGNALLIS  +G +R    TT+MLDCGF ++E E+R+ RL + P+D+S I
Sbjct: 1   MKFASLGSGSEGNALLISTQSGSTR----TTLMLDCGFGIKETERRLARLQMLPTDLSGI 56

Query: 61  VVTHEHSDHVSGVFKFARRYRIPVWLSYGTFQAVAEQASDVDVRFCADGQKIAIGDLELS 120
           +VTHEH DHV GVFKFARR+++PVWL+YGT+QAV ++   V + FC D ++ AIGDLEL 
Sbjct: 57  IVTHEHQDHVGGVFKFARRHKLPVWLTYGTYQAVHDKCDGVQLHFCRDNERFAIGDLELL 116

Query: 121 PYTVPHDAREPIQYVAGDGDRRLGVLTDAGQPTAHLVQALGACDALLLECNHDREMLERS 180
           PYTVPHDAREP+QYVA DG RRLGVLTDAG  TAH+V ALG CDAL+LECNHDR+ML  S
Sbjct: 117 PYTVPHDAREPVQYVASDGTRRLGVLTDAGHGTAHMVAALGGCDALMLECNHDRQMLVNS 176

Query: 181 PYPAFLKRRIGGDYGHLANDASAEILRLLDRSRLKRVIGAHLSQQNNTPELARAAIESVL 240
            YP  LK+RIGG+YGHL+N A+ EIL  LD+SRL+R++GAHLS +NNTPELARAA+  V+
Sbjct: 177 TYPPSLKQRIGGEYGHLSNHAAGEILAALDKSRLQRIVGAHLSLKNNTPELARAALMQVV 236

Query: 241 GHTFGDIGIACQEEGFSWLDV 261
                ++ IACQEEGF W+ V
Sbjct: 237 ADR-AEVLIACQEEGFDWVAV 256


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 657,661
Number of extensions: 27890
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 180
Effective length of database: 921,564
Effective search space: 165881520
Effective search space used: 165881520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)