BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3231.p
         (388 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981030|ref|YP_001352976.1| hypothetical protein mma_1286 [...   514   e-147

>gi|152981030|ref|YP_001352976.1| hypothetical protein mma_1286
           [Janthinobacterium sp. Marseille]
          Length = 373

 Score =  514 bits (1324), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 242/372 (65%), Positives = 294/372 (79%)

Query: 14  MKKLDLLGGITPAQFLRDYWHKKPLLIRNAIPGFTAPLPRQELFDLARRDEVESRLITHR 73
           MKKL LLGG+T A+FLRDYWHKKPLLIR AIP F   L R ELF L + ++VESRLITH 
Sbjct: 1   MKKLTLLGGLTAAEFLRDYWHKKPLLIRQAIPDFKPLLSRDELFGLVKSEDVESRLITHV 60

Query: 74  SDGWDMQHGPFNKLPPLKQKAWTLLVQGVNLHHPAADALLRQFRFVPDARLDDLMISYAT 133
              W+M  GPF +LPPLKQK WTLLVQGVNLH  A D+L+R+F F+PDARLDDLMISYAT
Sbjct: 61  KREWNMDSGPFEQLPPLKQKDWTLLVQGVNLHDEAVDSLMREFSFIPDARLDDLMISYAT 120

Query: 134 DGGGVGPHFDSYDVFLLQAHGQRRWRISAQDDLTLEEGVPLKILSHFQAEQEFVLEPGDM 193
           + GGVG HFDSYDVFLLQAHG RRWRI AQ DLTL +G+PLKIL +F+ E+EF+L PGDM
Sbjct: 121 ETGGVGAHFDSYDVFLLQAHGHRRWRIGAQTDLTLVDGMPLKILKNFKPEEEFILAPGDM 180

Query: 194 LYLPPHYAHDGVAVGECMTYSIGFRAPTYQELGESFLEFMMDTIDLPGRYADPDLKTSAK 253
           LYLPP YAH+GVA+ ECMTYSIGFRAP+YQELGE+FLE M+D+IDLPGRYADPDLK +  
Sbjct: 181 LYLPPQYAHEGVAMDECMTYSIGFRAPSYQELGEAFLESMIDSIDLPGRYADPDLKPAKH 240

Query: 254 PAELQLDMLTRIREELNKIRFTDDDITIFLGQHLSEPKPSVFFEAPTEEMSFARFFQGAK 313
            AE+   ML+RI  ELNK+RFT +DI +F+G++LSEPK  ++F+AP E ++ ARF Q AK
Sbjct: 241 SAEISAAMLSRIAAELNKVRFTQEDIALFVGEYLSEPKAQIYFDAPEENLTRARFLQNAK 300

Query: 314 KRGLVLHRKTRMLYRGSHVFINGESFQVGRADKVILAKLADHRTLEKTDFAQASEDLLEA 373
           K G+ L  K+ ML+R +++FING SF+VG  D  IL +LA+ R L  T  A AS D+++A
Sbjct: 301 KSGIKLSLKSLMLHRNNYIFINGTSFEVGDEDLAILTELANTRQLSGTIIASASADVIDA 360

Query: 374 LHQWHESGWLEI 385
            H WH+ GWL +
Sbjct: 361 FHTWHKDGWLRL 372


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 946,251
Number of extensions: 39935
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 303
Effective length of database: 906,776
Effective search space: 274753128
Effective search space used: 274753128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)