BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3230.p
         (180 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981604|ref|YP_001352977.1| FKBP-type peptidyl-prolyl cis-t...   249   5e-68

>gi|152981604|ref|YP_001352977.1| FKBP-type peptidyl-prolyl
           cis-trans isomerase SlyD [Janthinobacterium sp.
           Marseille]
          Length = 181

 Score =  249 bits (637), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 134/181 (74%), Positives = 151/181 (83%), Gaps = 3/181 (1%)

Query: 1   MKIAKNTVVSVNYKLSDAQNNLIEQSSEPMVYLHGGYHNTLPKIEEALDGKETGYSTTIQ 60
           MKIAKNTVV+V YKLSDAQ +LIE+  EPMVYLHGGY NTLPKIEEAL+GKE G+  TIQ
Sbjct: 1   MKIAKNTVVTVEYKLSDAQGDLIEEGREPMVYLHGGYENTLPKIEEALEGKEAGFEDTIQ 60

Query: 61  VEPEDAFGEYDSELVKIEPVERLPQPLEVGMQFEGSP--DDDSEESVIFTVTEVADGKAV 118
           VEPEDAFGEYD  LVKIEP  RLP+PLEVGMQFEGSP  +D+ E+ +IFTVT++AD K V
Sbjct: 61  VEPEDAFGEYDPNLVKIEPRARLPEPLEVGMQFEGSPETEDEDEQPLIFTVTDIADDKVV 120

Query: 119 LDGNHPLAGIALRFELAVTEVRAASEEEVAHGHVHGAHGHHHHHDDEDEGEAGDHFRSQP 178
           LDGNHPLAG+ALRF L VTEVRAA+EEE+AH HVH     HHH  D+DEGE GDHFRS P
Sbjct: 121 LDGNHPLAGMALRFNLKVTEVRAATEEEIAHEHVH-GAHGHHHGADDDEGEEGDHFRSHP 179

Query: 179 L 179
           +
Sbjct: 180 I 180


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.310    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 345,145
Number of extensions: 13416
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 103
Effective length of database: 936,352
Effective search space: 96444256
Effective search space used: 96444256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 126 (53.1 bits)