BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3229.p
         (313 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982565|ref|YP_001352978.1| hypothetical protein mma_1288 [...   235   3e-63

>gi|152982565|ref|YP_001352978.1| hypothetical protein mma_1288
           [Janthinobacterium sp. Marseille]
          Length = 314

 Score =  235 bits (599), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 120/280 (42%), Positives = 175/280 (62%), Gaps = 4/280 (1%)

Query: 29  GTPDFSFGVINHASAGAKGEDSLRQALTETDADNLAFVVVNGIKSPSEGCEDSLYNARHE 88
            TP FSFGVI       + E +LR+A++E+DADNLAFVV  G+K+  E C D+LY  R  
Sbjct: 25  ATP-FSFGVIAKPVKANESEAALREAISESDADNLAFVVAGGLKAAEEPCTDALYRNRKT 83

Query: 89  LLSQAQNGIFMSLAGSDWITCRDRENRSDAIERLARMRDIFYAGEFSLGATRLPLLRQSL 148
           LL  A+NGI ++++G DW  C + +NR  A +R+ R+R++ +  EFS G +++P++RQS+
Sbjct: 84  LLDSAKNGIVLAVSGDDWTRCVNTKNRLIATDRMNRLRELLFTDEFSFGDSKIPVVRQSM 143

Query: 149 TPKFRSYAENTRWEIGNVLFATVNLPAGNNHFLLDGGRNNEFEDRLIANRNWLQHLFAFA 208
            P+FRSY EN RW IG+V+FAT+N+PA NN++L   G N EFEDR  AN +WL+ LF  A
Sbjct: 144 MPQFRSYPENMRWRIGDVMFATINVPANNNNYLNAAGHNTEFEDRQTANSDWLKRLFLTA 203

Query: 209 ALKKSAAIVFFSDGNPFGPPPKHSFFRT-QRDGFAETRKLFSELAGKFHGRVLVVHSQGG 267
            + K   +V F DGNP       S F + +R+GFA+ R+       K+ G++L+VHS   
Sbjct: 204 KISKVDGVVIFCDGNPLLQAEHSSMFSSGKREGFADLRRQILAFGEKYRGKILIVHSDYN 263

Query: 268 KN--KTPAHILWSGNLGNVGVGERWLKIVMDEQLPQLFAV 305
                +P  I W GN+G + +   W KI ++     LF +
Sbjct: 264 TRPATSPKGISWRGNIGALRIEPPWRKIHVNPASTDLFTL 303


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 720,859
Number of extensions: 29275
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 230
Effective length of database: 914,170
Effective search space: 210259100
Effective search space used: 210259100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)