BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3228.p
         (897 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979852|ref|YP_001352979.1| DNA mismatch repair protein Mut...  1388   0.0  

>gi|152979852|ref|YP_001352979.1| DNA mismatch repair protein MutS
           [Janthinobacterium sp. Marseille]
          Length = 882

 Score = 1388 bits (3592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 690/890 (77%), Positives = 771/890 (86%), Gaps = 27/890 (3%)

Query: 8   HTPMMQQYLRIKADHPNTLVFYRMGDFYELFFEDAEKASRLMGVTLTQRGSSNGNPIKMA 67
           HTPMMQQYLRIKA++P TLVFYRMGDFYELFF+DAEKASRL+G+TLTQRG+SNGNPIKMA
Sbjct: 15  HTPMMQQYLRIKAEYPTTLVFYRMGDFYELFFDDAEKASRLLGITLTQRGASNGNPIKMA 74

Query: 68  GVPFHSVEQYLARLIKLGESVAICEQIGDPATSKGPVERKVVRVVTPGTLTDSDLLPEKA 127
           GVPFH+V+QYL++L+KLGES+AICEQIGDPATSKGPVERKV+RV+TPGTLTDSDLLPEK+
Sbjct: 75  GVPFHAVDQYLSKLVKLGESIAICEQIGDPATSKGPVERKVLRVITPGTLTDSDLLPEKS 134

Query: 128 ERCLLAMQLLPSKSRKQMQVGLAWLSMASGALKMMEFTVEAHLLDGRVKQELERISAAEV 187
           E+ LLA  L  +  RK   +GLAWLSMASG LK+MEF  +A   D R+K ELERI+ AE+
Sbjct: 135 EQPLLA--LYSTTQRKTATIGLAWLSMASGVLKLMEFATDAQNADVRLKHELERIAPAEI 192

Query: 188 LVAEGQLEQCEPLLPNRAVTVPDWHFDQPSSEKALLDQLGVATLHGFGADGLGPAICAAG 247
           L+     +        +  TVPDWHFD     KAL +QL V TL GFGA+ L  AI AAG
Sbjct: 193 LLPGSVNDLFSEFSLAKNTTVPDWHFDIAHGTKALYEQLNVGTLTGFGAENLSAAIGAAG 252

Query: 248 ALLRYAQSTQGRGLQHVRTLTVESENEFIGLDAATRRNLELTETIRAQDANTLAPTLFST 307
           ALLRYAQSTQG+GLQHVRTLTVE+ENEFIGLDAATRRNLELTETIR QDAN  A TLFS 
Sbjct: 253 ALLRYAQSTQGKGLQHVRTLTVETENEFIGLDAATRRNLELTETIRGQDAN--AATLFSL 310

Query: 308 LDHCRTAMGSRLLRHWLHHALRDQQVARARHAAINALMRTDACSGLSATLAAVPDIERIT 367
           LDHCRTAMGSRLLRHWLHHA RDQ VA ARHAAINALMR DACSGL++TLA+VPD+ERIT
Sbjct: 311 LDHCRTAMGSRLLRHWLHHARRDQSVAMARHAAINALMRADACSGLASTLASVPDVERIT 370

Query: 368 TRIALLSARPRDLAGLRAGLQQLGSLRAYVEMCARDAEAPLLEQLHDDLATPVECLDLLE 427
           TRIALLSARPRDLAG+R GLQQL SLRAYV MC +DA+APLL+ +HD LATP +CLDL+E
Sbjct: 371 TRIALLSARPRDLAGMRGGLQQLPSLRAYVSMCNKDADAPLLKTIHDALATPSDCLDLVE 430

Query: 428 RAIMLDPAAMVRDGGVIARGFDAELDELRGLSENAGQYLLELEARERERTGIANLRVEYN 487
           RAI ++PAAMVRDGGVIARGFDAELDELRGLSENAGQ+L++LE RER RTGI NLRVEYN
Sbjct: 431 RAIAMEPAAMVRDGGVIARGFDAELDELRGLSENAGQFLIDLETRERARTGINNLRVEYN 490

Query: 488 KVHGFYIEVTHGQTDKVPEDYRRRQTLKNAERYIIPELKAFEDKALSAQERSLSREKFLY 547
           KVHGFYIEVTHGQTDKVP+DYRRRQTLKNAERYI PELKAFEDKALSAQER+L+REK+LY
Sbjct: 491 KVHGFYIEVTHGQTDKVPDDYRRRQTLKNAERYITPELKAFEDKALSAQERALAREKYLY 550

Query: 548 EQLLNDMGVHIVRLQAIAHALAQLDTLVALADHAVRNNWCAPQLVAEPCIQIEQGRHPVV 607
           EQ+L  M  HI  LQ IAHALAQLDTLVALA+HA+R+NWCAPQLV+EP I IEQGRHPVV
Sbjct: 551 EQVLQQMTQHIATLQNIAHALAQLDTLVALAEHALRHNWCAPQLVSEPTITIEQGRHPVV 610

Query: 608 ENQIERFIANDCQLAAERKLLLITGPNMGGKSTFMRQVALITLLAYVGSFVPATSAVIGP 667
           EN IERFIANDC L++E KLLLITGPNMGGKST+MRQVALITLLAYVGSFVPA+SAVIGP
Sbjct: 611 ENHIERFIANDCLLSSECKLLLITGPNMGGKSTYMRQVALITLLAYVGSFVPASSAVIGP 670

Query: 668 IDRIFTRIGAADDLAGGRSTFMVEMTESASILNNATEHSLVLMDEVGRGTSTFDGLALAW 727
           IDRIFTRIGAADDLAGGRSTFMVEMTESA+ILN ATE+SLVLMDEVGRGTSTFDGLALAW
Sbjct: 671 IDRIFTRIGAADDLAGGRSTFMVEMTESAAILNGATENSLVLMDEVGRGTSTFDGLALAW 730

Query: 728 AIAKHLIDVTRSFTLFATHYFELTQLPDIHPSAANVHLSAVEHKDSIVFLHAVQSGPASQ 787
           AIAKHLID T+SFTLFATHYFELTQLP+IHP+AANVHLSAVEHKDSIVFLHAVQ+GPASQ
Sbjct: 731 AIAKHLIDNTKSFTLFATHYFELTQLPEIHPTAANVHLSAVEHKDSIVFLHAVQAGPASQ 790

Query: 788 SYGLQVAQLAGVPAPVIRAARKHLSALESQSMQPTSQFDLFS---TPAFTEPASEDEAEA 844
           SYGLQVAQLAGVP PVIRAARKHL+ LE+ SMQ T QFDLF+   +P   E A+E + +A
Sbjct: 791 SYGLQVAQLAGVPQPVIRAARKHLALLEANSMQATPQFDLFAGGGSPTTVESAAEPQ-QA 849

Query: 845 EALDDERAAPEAVQADALAQALLQSLAGIDPDALTPRQALEALYQLKALS 894
            A+D                   +++A I+PDAL+PR+AL+ALY+LK LS
Sbjct: 850 SAVD-------------------EAIAAINPDALSPREALDALYRLKELS 880


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,815,687
Number of extensions: 69555
Number of successful extensions: 234
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 1
Length of query: 897
Length of database: 1,221,021
Length adjustment: 92
Effective length of query: 805
Effective length of database: 880,897
Effective search space: 709122085
Effective search space used: 709122085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)