BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3226.p
         (411 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979788|ref|YP_001352813.1| multidrug resistance protein A,...   290   1e-79
gi|152980920|ref|YP_001353621.1| hypothetical protein mma_1931 [...    68   1e-12

>gi|152979788|ref|YP_001352813.1| multidrug resistance protein A,
           emrA [Janthinobacterium sp. Marseille]
          Length = 399

 Score =  290 bits (741), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 162/337 (48%), Positives = 214/337 (63%), Gaps = 28/337 (8%)

Query: 50  YGAYWYLIGSRYVETDNAYTGTEVATVTPAINGIVAAVDVVDTQAVKKGDVLVRIDDADA 109
           YG +W +    + +TD+AY    V  VTP + G V A+   DT+ V+ G  LV +D +DA
Sbjct: 37  YGVWWAIYARHFEDTDDAYVAGNVVQVTPQVGGTVIAIHADDTELVEAGKPLVDLDHSDA 96

Query: 110 KLAVDQAAADLDRTERKVRGYFANDAGLAAQVLAREADQKRASAQLLSAQADLQRAQIDL 169
           K+A+DQA A L +T R+VR  F N+  L A V  R               AD+ RA+ DL
Sbjct: 97  KVALDQAEAQLAQTVREVRTLFVNNGALGAAVTQR--------------VADVARARDDL 142

Query: 170 QRREALAKSGSVSGEELTNARTALLTAQANLKAAEAAEVQSRANIKATQGAQKASTVLTA 229
            RR+ L+ +G+V+ E+L +ART L+ A++ L+AA       R  + + Q        LT 
Sbjct: 143 ARRQELSGTGAVAKEDLEHARTTLIAAESALQAA-------RDQLTSNQA-------LTD 188

Query: 230 DTTVEDNPEVVLARAKLDQAKLDLERTVLRSPVDGVIARRQVQVGQRVQSGASLLSVVPM 289
            TTV  +P V  A A++  A L L R  L +P+ G IA+R VQVGQRV  G  LLSVVP+
Sbjct: 189 GTTVAQHPNVQRAAAQVQAAYLALSRNTLLAPITGYIAKRSVQVGQRVAPGTPLLSVVPL 248

Query: 290 QQMHVDANFKEGQLTKVRIGQPVTMTSDLYGGSVEYHGVVTGLSGGTGSAFAVIPAQNAT 349
             + VDANFKE Q+ K+RIGQPV + SD+YG  V+YHG V GLS GTG+AFA++P QNA+
Sbjct: 249 NALWVDANFKEVQVAKMRIGQPVELYSDVYGSGVKYHGKVAGLSAGTGAAFALLPTQNAS 308

Query: 350 GNWIKVVQRLPVRISLDPKELAQHPLSVGLSMVVEID 386
           GNWIKVVQR+PVRI+LDPKEL + PL VGLSM VE+D
Sbjct: 309 GNWIKVVQRIPVRITLDPKELEERPLRVGLSMQVEVD 345


>gi|152980920|ref|YP_001353621.1| hypothetical protein mma_1931
           [Janthinobacterium sp. Marseille]
          Length = 289

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 8/142 (5%)

Query: 247 DQAKLDLERTVLRSPVDGVIARRQVQVGQRVQSGASLLSVVPMQQMHVDANFKEGQLTKV 306
           D A+L+LERT +R+PVDG +    V  G    +G   L+V+     +V   F+E +L  +
Sbjct: 144 DTAQLNLERTDVRAPVDGYVTNLHVYAGDFATAGVPQLAVIDSNSYYVSGYFEETKLPYL 203

Query: 307 RIGQPVTMTSDLYGGSVEYHGVVTGLSGGT-----GSAFAVIPAQNATGNWIKVVQRLPV 361
           ++   V +   L  G     G +  +S G       +   ++   N T NW+++ QR+PV
Sbjct: 204 KVNDKVEIR--LMSGGPALQGHIESISRGITDRDASTGRELLADINPTFNWVRLAQRVPV 261

Query: 362 RISLDPKELAQHPLSVGLSMVV 383
           RI +D  +   H L  G++  V
Sbjct: 262 RIRIDELD-KNHQLVAGMTCTV 282


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.313    0.126    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 607,726
Number of extensions: 16576
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 3
Length of query: 411
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 325
Effective length of database: 903,079
Effective search space: 293500675
Effective search space used: 293500675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 131 (55.1 bits)