BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3225.p (515 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980891|ref|YP_001353625.1| fusaric acid resistance protein... 306 2e-84 gi|152981378|ref|YP_001352812.1| outer membrane protein, tolC-li... 299 3e-82 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 174 8e-45 gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 162 4e-41 gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 152 5e-38 >gi|152980891|ref|YP_001353625.1| fusaric acid resistance protein [Janthinobacterium sp. Marseille] Length = 498 Score = 306 bits (785), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 175/464 (37%), Positives = 272/464 (58%), Gaps = 9/464 (1%) Query: 36 ALMAGCASFTDLGPRAEPKSIDHYQSSQSLAASALQ--ATWPSDQWWTVYGDAQLNSLID 93 AL++ CA ++ P+A+ + S ++ +A+ A WP QWW YGDAQL++LI Sbjct: 15 ALLSACADMGNIKPQAQRMDANALGSGTVISQAAVNDAAQWPQQQWWHAYGDAQLDALIA 74 Query: 94 EALQSAPSMAVAKARLMKAEGAAQQQGAALLPEVSGNASLDHMKQSYNNGFPPALVPH-- 151 AL +P++ +A+AR+ +A+ A +A LP VS + S+ S ++ PP P Sbjct: 75 TALSDSPNLHIAEARVRQAQAYAGMAESATLPNVSASTSMTRQLFSAHDFIPP---PEAG 131 Query: 152 GYNNETRTSLDFSYEIDFWGKNRAALAAATSELEASRADAAQARITLATSIASAYAELAQ 211 Y R +++ +Y++D WG++R LAAA E++ S A++ AR+ L +I +Y +L+ Sbjct: 132 NYAWYNRVAVEATYDLDLWGRHRQELAAALDEVKVSSAESQMARLALENNIVRSYVQLSL 191 Query: 212 LYAQRDTNEAALKVRVETLDLFKQRFANGLETRGSVMQMEARRAIAQADLKATDESIALQ 271 +A +D E L R + L + ++R A GL T V Q+EA ++ DE+I + Sbjct: 192 QFALKDITEDTLAHREKGLQVMRKRLAAGLATEMDVTQLEAAIPPLHIQIEQYDEAIIVL 251 Query: 272 RNKLAALAGAGPDRGLQLARPQIDLSKP--FGLPQQLPVELLGRRPDIVAARLRAEAAGK 329 RN+LAALAG GP G ++ RP + L LP LP +L+GRRPD+ A R EAAGK Sbjct: 252 RNQLAALAGKGPAEGEKITRPTLALDNNAWLRLPAVLPADLIGRRPDVAARRWGVEAAGK 311 Query: 330 QIKVARAAFYPNVNLSAYIGFQSLGLSMLTRSGSDIGSVGPAISLPIFNGGRLRGQFRSA 389 QI+ A+AAFYP++NL A+IGFQ +G S + S I VGPAISLPIF+GGRLR + Sbjct: 312 QIEAAKAAFYPDINLMAFIGFQGIGFSNFLKGDSSIRGVGPAISLPIFDGGRLRSNLGAH 371 Query: 390 SASYDEAVANYDQAVTQALQDVADVGVSEKALTGRLADVKAAADAADEAYRIVSNRYNGG 449 +A+YD AV +Y+ + AL+ VA+ V ++L + A A +A + S + G Sbjct: 372 TAAYDIAVESYNGTLIHALESVANTLVVAQSLQQQKNLNDGALVTASKARTLASKGFAAG 431 Query: 450 LANYLDVLNAQDTLISNLRQLSDLRSRMFTLDVALVRALGGGYR 493 + ++L +LN++ L++ +Q + + +RM AL+ ALGGGY+ Sbjct: 432 MTDFLVLLNSEVALLTQEQQRAQITARMLESHAALMLALGGGYQ 475 >gi|152981378|ref|YP_001352812.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 501 Score = 299 bits (765), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 192/464 (41%), Positives = 266/464 (57%), Gaps = 4/464 (0%) Query: 31 AVLAAALMAGCASFTDLGPRAEPKSIDHYQSSQSLAASALQATWPSDQWWTVYGDAQLNS 90 A AA L++ CASF + P A K Y S+ SL Q WP W G A L + Sbjct: 19 ACCAAVLLSACASFKGIEPTASLKQSSDYTSTASLPQQGGQ--WPDASWAQAIGGAPLQA 76 Query: 91 LIDEALQSAPSMAVAKARLMKAEGAAQQQGAALLPEVSGNASLDHMKQSYNNGFPPALVP 150 L+DEA+ P++ VA AR+ A+ AA GA P S NAS + + + N PP L Sbjct: 77 LVDEAIAGNPNLQVAAARVAGAQAAADAAGANARPSWSANASSTYQRYTENGIIPPPLGG 136 Query: 151 HGYNNETRTSLDFSYEIDFWGKNRAALAAATSELEASRADAAQARITLATSIASAYAELA 210 Y ++ + +L+FSY+ DFWGK+ A L +A S +A++A+ AR+ ++T++A A+ +LA Sbjct: 137 E-YKSDNQLTLNFSYDFDFWGKHAAELRSALSAGKAAQAEQYNARLVISTAVARAWVQLA 195 Query: 211 QLYAQRDTNEAALKVRVETLDLFKQRFANGLETRGSVMQMEARRAIAQADLKATDESIAL 270 + Y Q D N+ LK E L + RF GL T+ Q+ A +A+ +E+IAL Sbjct: 196 RQYGQLDLNQEQLKASAEIQRLTQLRFKVGLGTQSENQQVTQSLASLRAENAQLNEAIAL 255 Query: 271 QRNKLAALAGAGPDRGLQLARPQIDLSKPFGLPQQLPVELLGRRPDIVAARLRAEAAGKQ 330 RN+LAAL G GPDRGLQ+ RP + LP LP+ L+GRRPDIVAAR EAA Sbjct: 256 TRNQLAALLGKGPDRGLQIERPALPSETAIALPDALPLGLIGRRPDIVAARWNVEAAQGD 315 Query: 331 IKVARAAFYPNVNLSAYIGFQSLGLSMLTRSGSDIGSVGPAISLPIFNGGRLRGQFRSAS 390 I A+ FYPNVN+ A+ GF S+GL+ L +S S I VGPAI LPIF+ LR + Sbjct: 316 IDAAKTLFYPNVNIMAFAGFSSIGLNNLLKSSSGIVGVGPAIYLPIFDRS-LRANLKGRV 374 Query: 391 ASYDEAVANYDQAVTQALQDVADVGVSEKALTGRLADVKAAADAADEAYRIVSNRYNGGL 450 ASYD +A Y+Q +T+AL DVAD S +A T + A A+ ++++ R G Sbjct: 375 ASYDGLIATYNQTLTEALHDVADQVQSLRAATLQSEQQHLATQASSNSFQLAQQRERVGT 434 Query: 451 ANYLDVLNAQDTLISNLRQLSDLRSRMFTLDVALVRALGGGYRA 494 N L VL+AQ TL+S R D ++R L + L++ALGGG+ A Sbjct: 435 TNMLPVLSAQMTLLSQRRIDLDTQARRSDLRITLIKALGGGFDA 478 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 174 bits (442), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 146/481 (30%), Positives = 234/481 (48%), Gaps = 25/481 (5%) Query: 28 ASAAVLAAALMAGCASFTDLGPRAEPKSIDHYQSSQSLAASALQATWPSD-----QWWTV 82 A A++LA ++ GCA +GP + Q+ ++ A QA+ P D WW + Sbjct: 8 AFASLLALLILGGCA----VGPDYQRPDAPVAQAWKTEAG--WQASNPRDGELKGAWWEI 61 Query: 83 YGDAQLNSLIDEALQSAPSMAVAKARLMKAEGAAQQQGAALLPEVSGNASLDHMKQSYNN 142 + DA+LN+L ++AL++ +M +A+AR+ +A A ++ P++ A + S Sbjct: 62 FRDAELNALQEQALKNGQTMVIAQARVDQARAQANVANSSFFPKIGAQAGSARNRTSAER 121 Query: 143 GFPPALVPHGYNNETRTSLDF------SYEIDFWGKNRAALAAATSELEASRADAAQARI 196 L + N + DF SYE+D +G+ R A + + ++AD R+ Sbjct: 122 ----PLTNYNSQNSSVVQNDFNAAFTVSYELDLFGRVRRQAEGAGATAQQAQADFENTRL 177 Query: 197 TLATSIASAYAELAQLYAQRDTNEAALKVRVETLDLFKQRFANGLETRGSVMQMEARRAI 256 L +A+ Y L Q A+ D + L + + LD R G + + Q + A Sbjct: 178 VLTAELAADYLVLRQTDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQGLTAA 237 Query: 257 AQADLKATDESIALQRNKLAALAGA-GPDRGLQLARPQIDLSKPFGLPQQLPVELLGRRP 315 Q L + A +N +A L G PD L + + ++ +P P LL RRP Sbjct: 238 TQTQLTLLQDQRARYQNAIATLVGVPAPDFKLPV---NLAVTTAPAIPLTAPAALLERRP 294 Query: 316 DIVAARLRAEAAGKQIKVARAAFYPNVNLSAYIGFQSLGLSMLTRSGSDIGSVGPAISLP 375 DI AA AA QI VAR+A++P++ LS G + LS L + + + S+G + + Sbjct: 295 DIAAAERAMAAANAQIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLWSIGVSATQM 354 Query: 376 IFNGGRLRGQFRSASASYDEAVANYDQAVTQALQDVADVGVSEKALTGRLADVKAAADAA 435 IF+GGR A A Y +A+ NY Q+V A+Q+V D S+ AL L K AAD+A Sbjct: 355 IFDGGRTSANVDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAKVAADSA 414 Query: 436 DEAYRIVSNRYNGGLANYLDVLNAQDTLISNLRQLSDLRSRMFTLDVALVRALGGGYRAA 495 D + + ++RY G+ L+V+ AQ T +S RQ L + V L++ALGGG+ A Sbjct: 415 DRSLGLSTDRYQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALGGGWHAH 474 Query: 496 D 496 + Sbjct: 475 E 475 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 162 bits (410), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 149/491 (30%), Positives = 233/491 (47%), Gaps = 49/491 (9%) Query: 28 ASAAVLAAALMAGCASFTDLGPRAEPKS--IDHYQSSQSLAASALQATW----PSDQ--- 78 A + ++AA ++AGC++ P E K + Y+ ++ A+ L W P+D Sbjct: 7 ALSTMVAALVLAGCSTAR---PPEELKLDLPNAYREQSTVKANELDGAWKLAAPADNKDR 63 Query: 79 --WWTVYGDAQLNSLIDEALQSAPSMAVAKARLMKAEGAA--------QQQGAALLPEVS 128 WW V+GD QL++LI EA S ++A+A AR+ A A Q A + P S Sbjct: 64 GAWWKVFGDEQLSNLIVEAGNSNLNLAIALARVKDARAIAGVVDADRGVQVDAGVGPTRS 123 Query: 129 GNASLDHMKQSYNNGFPPALVPHGYNNETRTSLDFSYEIDFWGKNRAALAAATSELEASR 188 GNA G + + R L F+YE+D +G+ A AA + E Sbjct: 124 GNA-------------------QGASTQYRAPLSFAYEVDLFGRLSDASRAARLDAEGQE 164 Query: 189 ADAAQARITLATSIASAYAELAQLYAQRDTNEAALKVRVETLDLFKQRFANGLETRGSVM 248 A + L + +A Y + L ++ D E + +R E LDL ++RF G + V Sbjct: 165 AAYRSVLLALQSDVAQQYFTIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVA 224 Query: 249 QMEARRAIAQADLKATDESIALQRNKLAALAGAGPDRGLQLARPQIDLSKPF-GLPQQLP 307 Q + A A+L+ A + + LA L G P + P L+ +P LP Sbjct: 225 QAKTEWATTSAELEGVKRQRAQRDHALAILLGKAP---AEFTLPVAPLAAAVVTVPSGLP 281 Query: 308 VELLGRRPDIVAARLRAEAAGKQIKVARAAFYPNVNLSAYIGFQSLGLSMLTRSGSDIGS 367 +LL RRPDI A+ + A+ +I A+AAF+P + L+ G++S L L + S Sbjct: 282 SDLLERRPDIAQAQRQLAASSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWM 341 Query: 368 VGPAI----SLPIFNGGRLRGQFRSASASYDEAVANYDQAVTQALQDVADVGVSEKALTG 423 +GP + S+P+F+GGR + A A+Y+ VANY V QDV D + + L Sbjct: 342 LGPVVGTILSMPLFDGGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDR 401 Query: 424 RLADVKAAADAADEAYRIVSNRYNGGLANYLDVLNAQDTLISNLRQLSDLRSRMFTLDVA 483 +L + A ++A A R+ RY G A+Y +V++AQ + +S+ R + V Sbjct: 402 QLQFEEQAVNSAQLASRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVG 461 Query: 484 LVRALGGGYRA 494 L+RALGGG+ A Sbjct: 462 LIRALGGGWEA 472 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 152 bits (384), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 138/430 (32%), Positives = 204/430 (47%), Gaps = 37/430 (8%) Query: 79 WWTVYGDAQLNSLIDEALQSAPSMAVAKARLMKAEGAAQQQGAALLPEVSGNASLDHMKQ 138 W + D +L LI A+ + + VA R+ +A Q A LLP ++ NA+ + Sbjct: 52 WRNFFTDPRLQVLIGNAIANNRDLRVAALRIEEARALYNIQSADLLPTLNVNATGSRAR- 110 Query: 139 SYNNGFPPALVPHGYNNETRTSLDFSY---------EIDFWGKNR----AALAAATSELE 185 VP +N + + +Y E+DF+G+ R AALAA S E Sbjct: 111 ----------VPASISNTGSSVVSSNYQVGLGLAAFELDFFGRVRSLSDAALAAYLSTEE 160 Query: 186 ASRADAAQARITLATSIASAYAELAQLYAQRDTNEAALKVRVETLDLFKQRFANG----L 241 A RA A+I+L + +A AY Q+D + RVE L KQRF G L Sbjct: 161 AQRA----AQISLVSEVAKAYLSERSFAEQQDLARQTYESRVEAYKLSKQRFEVGASSAL 216 Query: 242 ETRGSVMQMEARRAIAQADLKATDESIALQRNKLAALAGAGPDRGLQLARPQIDLSKPFG 301 + R ++ RA A+L A + A N L L G P L A+ + Sbjct: 217 DLRNDEALLQTARA---AELLAQRQR-AQAMNALTLLVGQ-PLTDLPPAQALSSQTILTD 271 Query: 302 LPQQLPVELLGRRPDIVAARLRAEAAGKQIKVARAAFYPNVNLSAYIGFQSLGLSMLTRS 361 +P LP +LL +RPDI +A +A I ARAAF+P ++L+A +G S L+ L Sbjct: 272 IPAGLPSDLLTQRPDIRSAEQTLLSANANIGAARAAFFPRISLTAGLGTSSNELAGLFEG 331 Query: 362 GSDIGSVGPAISLPIFNGGRLRGQFRSASASYDEAVANYDQAVTQALQDVADVGVSEKAL 421 GS S P + LPIF+ GR RG A D AVANY++++ A ++V+D V+ L Sbjct: 332 GSRSWSFAPQLVLPIFDAGRNRGNLNLAEVRKDIAVANYEKSIQVAFREVSDALVARDLL 391 Query: 422 TGRLADVKAAADAADEAYRIVSNRYNGGLANYLDVLNAQDTLISNLRQLSDLRSRMFTLD 481 ++ + +A E ++ + R+ G+A+ LDVL+AQ L + L +R T Sbjct: 392 DQQVEAQRLVQEAQAERFKFATQRFQNGIASSLDVLDAQRELFTAQLSLVQVRLTRLTNA 451 Query: 482 VALVRALGGG 491 V L R+LGGG Sbjct: 452 VDLYRSLGGG 461 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.127 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 980,501 Number of extensions: 34771 Number of successful extensions: 204 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 16 Length of query: 515 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 428 Effective length of database: 899,382 Effective search space: 384935496 Effective search space used: 384935496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)