BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3221.p (789 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980612|ref|YP_001352196.1| xanthine dehydrogenase, subunit... 1305 0.0 gi|152980986|ref|YP_001352464.1| carbon-monoxide dehydrogenase l... 115 1e-26 >gi|152980612|ref|YP_001352196.1| xanthine dehydrogenase, subunit B [Janthinobacterium sp. Marseille] Length = 785 Score = 1305 bits (3376), Expect = 0.0, Method: Compositional matrix adjust. Identities = 642/785 (81%), Positives = 706/785 (89%), Gaps = 2/785 (0%) Query: 1 MNKQSEQFLHTLVPPPADWATVGKPHPHESARLHVTGEATYTDDIVELQGTLHAALGLSQ 60 MNKQ+E F+ VG P+PHESA LHVTGEA YTDDIVEL GTLHAALGLSQ Sbjct: 1 MNKQTEVFMSDTALQGVK--AVGTPYPHESAYLHVTGEAIYTDDIVELHGTLHAALGLSQ 58 Query: 61 KAHARLRAIDLDKVKTAPGVVAVLTAQDIPGDNQCGAIIHDDPVLADELVQYVGQPIFIV 120 KAHAR+ +IDL KVK APGV+AVLTA DIPG+N+CGAIIHDDPVLA++LVQY+GQPIF+V Sbjct: 59 KAHARINSIDLGKVKAAPGVIAVLTAADIPGENECGAIIHDDPVLAEDLVQYIGQPIFVV 118 Query: 121 VADSHDRARRAARLAVIDYEELPPILTPRAAHAAQSYVLPPMHLSRGEPAVALALAPHKL 180 +A SHD ARRAARL VI+Y ELPPILTPRAAHAA+SYVLPPMHL RG+ A A A A +KL Sbjct: 119 IATSHDAARRAARLGVIEYAELPPILTPRAAHAAESYVLPPMHLKRGDAATAFAAAANKL 178 Query: 181 RGQFDVGGQEQFYLEGQISYAIPKEGRSMHVYCSTQHPSEMQHHIATVLQLAAHDVLVEC 240 GQFDVGGQEQFYLEGQISYAIPKEG MHVYCSTQHPSEMQHHIA VL +A+HDVLVEC Sbjct: 179 VGQFDVGGQEQFYLEGQISYAIPKEGGGMHVYCSTQHPSEMQHHIAHVLNIASHDVLVEC 238 Query: 241 RRMGGGFGGKESQSALWACAAAVAAAHLRRPVKLRADRDDDMMVTGKRHCFAYDYEIGYD 300 RRMGGGFGGKESQSALWAC AA AAAHLRRPVKLRADRDDDM+VTGKRHCFAYDYEIGYD Sbjct: 239 RRMGGGFGGKESQSALWACVAAFAAAHLRRPVKLRADRDDDMIVTGKRHCFAYDYEIGYD 298 Query: 301 DDGRIVAAKIDMISRAGFSADLSGPVATRAVCHFDNAYYLSDVEIHAMCGKTHTQSNTAF 360 ++GRI+AAKIDMISRAGFSADLSGPVATRAVCHFDNAYYLSDVEIHAMCGKT+TQSNTAF Sbjct: 299 NNGRILAAKIDMISRAGFSADLSGPVATRAVCHFDNAYYLSDVEIHAMCGKTNTQSNTAF 358 Query: 361 RGFGGPQGALAIEYIIDEIARNLGRDPLEIRRNNFYGPSEEEGPLARNVTHYGQKVEDNV 420 RGFGGPQGA+AIEYI+DEIARNLG+DPLEIRR NFYG S+ +GP ARNVTHYGQKVEDN+ Sbjct: 359 RGFGGPQGAIAIEYIVDEIARNLGKDPLEIRRLNFYGSSDADGPDARNVTHYGQKVEDNI 418 Query: 421 IHGLVDQLEQSSRYQERRGEIARFNAANTVLKKGLALTPVKFGISFNVPHLNQAGALVHV 480 IH LVD+LE SS YQ RR I FNA + VLKKGLALTPVKFGISFNVPHLNQAGALVH+ Sbjct: 419 IHALVDELEASSEYQARRAAINVFNADSPVLKKGLALTPVKFGISFNVPHLNQAGALVHI 478 Query: 481 YTDGSVLVNHGGTEMGQGLNTKVAQVVAHALGVPLEKVRCSATDTSKVANTSATAASTGS 540 YTDGS+LVNHGGTEMGQGLNTKVAQVVA+A G+PLE+VRC+ATDTSKVANTSATAASTG+ Sbjct: 479 YTDGSILVNHGGTEMGQGLNTKVAQVVANAFGLPLEQVRCTATDTSKVANTSATAASTGT 538 Query: 541 DLNGKAAQDAALQIRARLAEVAARHFKVESSALRFADGLVIAGEQSLPFVELVMQAYLQR 600 DLNGKAAQ AALQIR RLA +AA+ F V+ + + FADG V +GEQS+ F ELVMQ YL R Sbjct: 539 DLNGKAAQHAALQIRDRLANLAAQRFGVDVATIGFADGKVSSGEQSIAFKELVMQGYLAR 598 Query: 601 VQLWSDGFYSTPKVHWDAKRMYGHPFFYYAYAAAVSEVVIDTLTGEWKLLQADLLYDAGE 660 VQLWSDGFYSTP+VHW+AK M GHPF+YYAY AAV+EVVIDTLTGEWKLL+AD LYDAGE Sbjct: 599 VQLWSDGFYSTPRVHWNAKTMNGHPFYYYAYGAAVAEVVIDTLTGEWKLLRADALYDAGE 658 Query: 661 SLNPALDIGQVEGGFIQGMGWLTTEELWWSQDGKLMTHAPSTYKIPAISDCPAALRTELY 720 +LNPA+D+GQVEGGFIQGMGWLTTEELWW+++GKLMTHAPSTYKIPAISDCP R +L+ Sbjct: 659 ALNPAIDLGQVEGGFIQGMGWLTTEELWWNKEGKLMTHAPSTYKIPAISDCPPDFRVKLF 718 Query: 721 ANSNVSDTIHRSKAVGEPPLLLPFSVFLAIRDAVSAVGQHRVNPPLRAPATSEAILDAVD 780 NSNV D+IHRSKAVGEPPLLLPFSVF AIRDAV+AVG +R+NPPLRAPATSEAILDA+D Sbjct: 719 KNSNVQDSIHRSKAVGEPPLLLPFSVFFAIRDAVAAVGNNRINPPLRAPATSEAILDAID 778 Query: 781 AVRAA 785 AVRAA Sbjct: 779 AVRAA 783 >gi|152980986|ref|YP_001352464.1| carbon-monoxide dehydrogenase large subunit [Janthinobacterium sp. Marseille] Length = 825 Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 193/803 (24%), Positives = 316/803 (39%), Gaps = 82/803 (10%) Query: 29 ESARLHVTGEATYTDDIVELQGTLHAALGLSQKAHARLRAIDLDK-----VKTAPGVVAV 83 E RL + G+ Y D+ + L A S AHARL I+ + V T + +V Sbjct: 53 EDKRL-LLGQGKYVGDM-RMPDMLEVAFVRSPVAHARLGQIEKPQGMEHLVYTMADMTSV 110 Query: 84 ---LTAQDIPGDNQCGAIIHDDPVLADELVQYVGQPIFIVVADSHDRARRAARLAVIDYE 140 + A +PG + LA + V++VG+ + +A RA A V+DY+ Sbjct: 111 HPIVAASSLPGFKRSAQY-----PLAQDKVRHVGELVAACIAPDRARAEDIAGSVVVDYQ 165 Query: 141 ELPPILTPRAAHAAQSYVLPPMHLSRGEPAVALALAPHKLRGQFDVGGQEQFYLEGQISY 200 ELP + + + V H E A ++ + L Sbjct: 166 ELPVMADMYGTLQSDTRV----HDDWSENVFAETNIDRRVSPTDEAVHSVSRKLRMARQC 221 Query: 201 AIPKEGRS-----------MHVYCSTQHPSEMQHHIATVLQLAAHDVLVECRRMGGGFGG 249 +P EGR+ + +Y + Q P + +A L L + V +GGGFG Sbjct: 222 MMPMEGRAVLCWWDTRVDQLIMYSAAQVPHINRTGLAECLGLDEGQIRVISPDVGGGFGY 281 Query: 250 KESQSALWACAAAVAAAHLRRPVKLRADRDDDMMVTGKRHCFAYDYEIGYD--DDGRIVA 307 K C A +A HL+RP++ DR + + T +C + Y+I D +GR+ Sbjct: 282 KGILLPEEICCAWLAM-HLKRPIRWLEDRREQL--TANANCREHGYDIAVDVTSEGRLAG 338 Query: 308 AKIDMISRAG------FSADLSGPVATRAVCHFDNAYYLSDVEIHAMCGKTHTQSNTAFR 361 + D + +G FSA L A + Y + T+ +R Sbjct: 339 IRCDAVVDSGAYSSYPFSACLE---AAQIGSILPGPYVMDSFVCRTRSAATNKPPILPYR 395 Query: 362 GFGGPQGALAIEYIIDEIARNLGRDPLEIRRNNFYGPSEEEGPLARNVTH--YGQKVEDN 419 G A+E ++D AR LG +P +R + + P A N+T+ + Sbjct: 396 GVARTGVCFALEVMLDIAARELGIEPHVLRAKSLVPAAAM--PYA-NITNKLFDSGDYTT 452 Query: 420 VIHGLVDQLE-QSSRYQERRGEIARFNA-ANTVLKKGLAL--------TPVKFGISF-NV 468 ++ V ++ + R ++R A + A L G+A+ T V G V Sbjct: 453 CMNKAVAAIDWEGCRAKQRERHAANGDTPAQKRLGLGMAVFCEQGAHGTSVYHGWGIPMV 512 Query: 469 PHLNQAGALVHVYTDGSVLVNHGGTEMGQGLNTKVAQVVAHALGVPLEKVRCSATDTSKV 528 P Q A DG + + G GQGL T +AQ+ LG+ + KVR DT Sbjct: 513 PGYEQCTA--RFTPDGILELRIGVHSHGQGLETSMAQIAHTVLGIDIAKVRVIHGDTGMT 570 Query: 529 ANTSATAASTGSDLNGKAAQDAALQIRARLAEVAARHFKVESSALRFADGLVIAGE--QS 586 ++ T S + + G A A Q+ R+ +AA + + DG V + + Sbjct: 571 PYSTGTWGSRCAVMAGGAVGTACEQLAERVKVMAAVLLDTDVGLMNLKDGTVGVQDSVKR 630 Query: 587 LPFVELVMQAYL--QRVQLWS---DGFYSTPKVHWDAKRMYGHPFFYYAYAAAVSEVVID 641 L E+ Y Q++ + S G +V K M F YA + EV D Sbjct: 631 LALSEIAHTWYRAPQKLPVGSVDPGGL----EVVAGYKMMPDAGTFSYACHTCLVEV--D 684 Query: 642 TLTGEWKLLQADLLYDAGESLNPALDIGQVEGGFIQGMGWLTTEELWWSQDGKLMTHAPS 701 T TG +L + D G LNP + GQ+ GG QG+G EE+ + +G+ + Sbjct: 685 TATGHVAILDYVICEDGGVLLNPLIVEGQIYGGLAQGIGTALYEEMPFDSEGQPLASTMQ 744 Query: 702 TYKIPAISDCPAALRTELYANSNVSDTIHRSKAVGEPPLLLPFSVFL-AIRDAVSAVGQH 760 Y +P + P L+ + ++ + K +GE + P + + I DA+ +G Sbjct: 745 DYLLPGAGEMPPT--RMLHMETPSPNSKYGQKGIGEGGAIAPPAAIINGINDALYGLGAE 802 Query: 761 RVNPPLRAPATSEAILDAVDAVR 783 + PA +L+A+ A + Sbjct: 803 LT----QCPANPRRVLEALAAAK 821 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,827,149 Number of extensions: 75943 Number of successful extensions: 226 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 228 Number of HSP's successfully gapped: 2 Length of query: 789 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 698 Effective length of database: 884,594 Effective search space: 617446612 Effective search space used: 617446612 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)