BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3220.p (494 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980541|ref|YP_001352197.1| xanthine dehydrogenase, subunit... 765 0.0 gi|152981342|ref|YP_001352456.1| aerobic-type carbon monoxide de... 73 3e-14 gi|152982374|ref|YP_001352466.1| carbon-monoxide dehydrogenase s... 71 2e-13 >gi|152980541|ref|YP_001352197.1| xanthine dehydrogenase, subunit A [Janthinobacterium sp. Marseille] Length = 496 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/488 (75%), Positives = 410/488 (84%) Query: 7 PIQFYFRGQTHEVAGQPTTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGELRHDQLE 66 PI+FYFRG THEV+G TRTVLQHLRED+HCTGTKEGCAEGDCGACTVVVGEL D LE Sbjct: 4 PIRFYFRGTTHEVSGISNTRTVLQHLREDMHCTGTKEGCAEGDCGACTVVVGELHGDHLE 63 Query: 67 LKTVNSCIQFLPTLDGRALFTVEDLKQADGCLHPVQQAMVECHGSQCGFCTPGFVMSLWG 126 L TVNSCIQFLPTLDG+ALFTVEDLKQ+DGCLHPVQQAMVECHGSQCGFCTPGFVMSLW Sbjct: 64 LNTVNSCIQFLPTLDGKALFTVEDLKQSDGCLHPVQQAMVECHGSQCGFCTPGFVMSLWN 123 Query: 127 LYLKHDKDGITPSKREIDDALSGNLCRCTGYRPIIDAARRMGELPKVEFDREAVKQALRE 186 LY + S R+IDDALSGNLCRCTGYRPIIDAA RMGELP V+FD V ALR Sbjct: 124 LYQRDAGSDTALSPRQIDDALSGNLCRCTGYRPIIDAAHRMGELPPVQFDHAPVIDALRA 183 Query: 187 IDHDAPLAVSHAGQTFHAPRTLQQLAQLRAALPQARILAGSTDVGLWVTKQMRELGNIIY 246 I L++SH G+TFHAPRT+ QLA LRA LP+ARILAGSTDVGLWVTK MR+LG+IIY Sbjct: 184 IQRHEVLSISHDGRTFHAPRTIAQLAALRAELPKARILAGSTDVGLWVTKHMRDLGDIIY 243 Query: 247 IGRVEELRTISVHGEMLEIGAGVSLEEAYAEAARHYPEELSELWQRFASLPVRHAGTLGG 306 IG+VE L++I LEIGAGV+LE+AYA A +HYP+ELSELWQRFASLPVR+AGTLGG Sbjct: 244 IGQVEALKSIKERSGWLEIGAGVTLEKAYAAAHQHYPQELSELWQRFASLPVRNAGTLGG 303 Query: 307 NVANGSPIGDSMPWLIALGAQILLYSVRGQRVMALEDFYLAYQKSALQADEVVQAVRIPL 366 NVANGSPIGDSMPWLIALG I+L SV G+R M LEDFYLAYQKSALQ +E VQAVRIPL Sbjct: 304 NVANGSPIGDSMPWLIALGTHIVLRSVVGEREMPLEDFYLAYQKSALQPNEFVQAVRIPL 363 Query: 367 PHKDVRFRVYKLSKRFDQDISAVCAAFALRMEGDTISEARIAFGGMAATPKRAAQAEALL 426 P +DV FR YKLSKRFDQDISAVCAAFA + + ARIA+GGMAATPKRAA AEA L Sbjct: 364 PRQDVVFRTYKLSKRFDQDISAVCAAFAFELVDGQVRNARIAYGGMAATPKRAALAEAAL 423 Query: 427 QGGAWSESQVRAAMAALAQDYAPLSDMRASASYRLRSAQNLLYRYWLETRTEAPLTRQDV 486 G AW+E VRAA++ LAQDYAPLSDMRAS++YR+++AQNLLYRYWLETR +AP+ + Sbjct: 424 NGKAWNEENVRAAISLLAQDYAPLSDMRASSAYRMKTAQNLLYRYWLETRADAPMPATSL 483 Query: 487 RAFAVDAA 494 RAF ++AA Sbjct: 484 RAFTINAA 491 >gi|152981342|ref|YP_001352456.1| aerobic-type carbon monoxide dehydrogenase, small subunit [Janthinobacterium sp. Marseille] Length = 153 Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 69/139 (49%), Gaps = 13/139 (9%) Query: 28 VLQHLREDLHCTGTKEGCAEGDCGACTVVVGELRHDQLELKTVNSCIQFLPTLDGRALFT 87 +L LR+ L TGTK GC CGACTV L + + SCI + G+ + T Sbjct: 21 LLWALRDHLGMTGTKFGCGMALCGACTV--------HLNGQAIRSCITPVSAAVGQNITT 72 Query: 88 VEDLKQADGCLHPVQQAMVECHGSQCGFCTPGFVMSLWGLYLKHDKDGITPSKREIDDAL 147 +E + + D VQQA E QCG+C G +MS L K P+ EI+ A+ Sbjct: 73 IEAMSE-DSVGKRVQQAWTELGVPQCGYCQSGQIMSATALL----KTTPHPTDAEIESAM 127 Query: 148 SGNLCRCTGYRPIIDAARR 166 SGN+CRC Y I A ++ Sbjct: 128 SGNICRCGTYTRIRAAIKQ 146 >gi|152982374|ref|YP_001352466.1| carbon-monoxide dehydrogenase small subunit [Janthinobacterium sp. Marseille] Length = 178 Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 16/161 (9%) Query: 8 IQFYFRGQTHEVAGQPTTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGELRHDQLEL 67 +Q + +++ QP T + LR+ T T GC +G CGACT+ +++ Sbjct: 16 VQLTVNDRCYQLTLQPRTH-LADALRDHCGLTATHIGCEQGVCGACTI--------EVDG 66 Query: 68 KTVNSCIQFLPTLDGRALFTVEDLKQADGCLHPVQQAMVECHGSQCGFCTPGFVMSLWGL 127 SC+Q +G+ + T+E D + ++ A H QCG+CTPG +M+ + Sbjct: 67 APQRSCLQSAKRFEGKQIRTLEAFDD-DPLMAKLRAAFSAEHALQCGYCTPGMLMTARDI 125 Query: 128 YLK-HDKDGITPSKREIDDALSGNLCRCTGYRPIIDAARRM 167 L+ D D + + + L+GNLCRCTGY I+ A R+ Sbjct: 126 VLRLPDAD-----EARVCEELAGNLCRCTGYFGIVRAILRV 161 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,055,070 Number of extensions: 40243 Number of successful extensions: 133 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 4 Length of query: 494 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 407 Effective length of database: 899,382 Effective search space: 366048474 Effective search space used: 366048474 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)