BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3213.p (314 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982787|ref|YP_001352203.1| LysR family transcriptional reg... 574 e-165 gi|152982855|ref|YP_001355260.1| LysR family transcriptional reg... 131 5e-32 gi|152982346|ref|YP_001355337.1| LysR family transcriptional reg... 100 1e-22 gi|152982397|ref|YP_001353609.1| LysR family transcriptional reg... 59 3e-10 >gi|152982787|ref|YP_001352203.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 574 bits (1479), Expect = e-165, Method: Compositional matrix adjust. Identities = 272/310 (87%), Positives = 291/310 (93%) Query: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLN+PQPSISASLRKLRELTGDPLLVRGAR Sbjct: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNRPQPSISASLRKLRELTGDPLLVRGAR 60 Query: 61 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEERTFHLAAPDYMNTPFFTEVIAR 120 GMVPTQHGESL+K AKRILDE E LF+PKTAFVPQ+E RTFH+AAPDYMNT FFTEVIAR Sbjct: 61 GMVPTQHGESLMKSAKRILDEAEHLFIPKTAFVPQDEARTFHIAAPDYMNTQFFTEVIAR 120 Query: 121 VRRESPRSRIVIHALGPDTDYVRRLSDGDLDLVIANWDAPPAHLHLSKLFDDPIVCLMRA 180 +RRESP+S IVIHALGPDTDYVR LSDG+LDLVIANWD P HLH+SKLFDDPIVCLMR+ Sbjct: 121 LRRESPKSHIVIHALGPDTDYVRLLSDGELDLVIANWDEMPEHLHMSKLFDDPIVCLMRS 180 Query: 181 DCAYAKRTAREAMRMEDYLDLPHAAPSQILPGYHGSIDSFLEKQNLRRNVVVESAHFRML 240 DCAYAKRTA++AM +EDYL LPHAAPSQILPGYHG+ID+FLEKQNLRRN+VVESAHFRML Sbjct: 181 DCAYAKRTAKDAMTIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLRRNIVVESAHFRML 240 Query: 241 PYMVAQTDLVLTAGQQFARFYEKLLPLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 PYMV +TDLVLTAGQQF FYEK L LKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRA Sbjct: 241 PYMVEKTDLVLTAGQQFTSFYEKTLSLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 Query: 301 QVSAAAKTIA 310 QV AAAK ++ Sbjct: 301 QVCAAAKVLS 310 >gi|152982855|ref|YP_001355260.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 131 bits (330), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 148/296 (50%), Gaps = 12/296 (4%) Query: 8 LDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMVPTQH 67 +D++L+ ++ E+NV+ A++L QP++S +L +LR + DPL VR ++GM PT + Sbjct: 6 VDLNLLVAFDAIVKERNVTSAAVRLGVSQPAMSNALARLRIIFNDPLFVRTSQGMQPTPY 65 Query: 68 GESLLKPAKRILDETERLFVPKTAFVPQEEERTFHLAAPDYMNTPFFTEVIARVRRESPR 127 E L++P R + + F P +TF + +++ ++ +P Sbjct: 66 AEQLIEPVSRACELITSALQINSVFDPATTTKTFSFYMTEIGEILLLPKLLKHIQVAAPN 125 Query: 128 SRIVIHALGPDTDYVRRLSDGDLDLVIANWDAPPAHLHLSKLFDDPIVCLMRADCAYAKR 187 + + + + P+ +++G++DL + + A + +L+ D C++R Sbjct: 126 ACVRVRRI-PEQGAKEAMANGEIDLAVGLFPYLKAGFYQQRLYTDKFACIVRQ----GHP 180 Query: 188 TAREAMRMEDYLDLPHAAPSQILPGYHGSIDSFLEKQNLRRNVVVESAHFRMLPYMVAQT 247 T +++ + Y+D PH G+ +I+ L ++LRR +V+ S +F +LP ++ QT Sbjct: 181 TVHDSLTPQQYVDTPHVIVMSANTGHDAAIEKILLTEHLRRKIVMTSQNFLVLPMIIEQT 240 Query: 248 DLVLT----AGQQFARFYEKLLPLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLR 299 D + T Q+ A + + L+S PI FP + Q WHER H +KW+R Sbjct: 241 DAIATIPFRMAQKIASYSTGIKILES---PIPFPNVDIKQHWHERFHYDPANKWMR 293 >gi|152982346|ref|YP_001355337.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 319 Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/317 (26%), Positives = 140/317 (44%), Gaps = 30/317 (9%) Query: 8 LDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMVPTQH 67 LD++L+R+ ++ E+N++R A L QP++S +LR+LR+ GD L++R A G+ PT Sbjct: 6 LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLGDELVIRTAHGVKPTSR 65 Query: 68 GESLLKPAKRILDETERLFVPKTAFVPQEEERTFHLAAPDYMNTPFFTEVIARVRRESPR 127 E L +R L + E P T F TF +A D + ++ + +++P Sbjct: 66 AEELWPVVRRALSDLEAAVTPDT-FDVSRANTTFRMAMADATAALWLPFLVRAIEKDAPG 124 Query: 128 SRIVIHALGPDTDYVRR--LSDGDLDLVIANWDAPPAHLHLS-----------KLFDDPI 174 + + P T R L GD+DL I + A L +L+ Sbjct: 125 LNV---RMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGEY 181 Query: 175 VCLMRADCAYAKRTAREAMRMEDYLDLPHAAPSQILPGYHGS----IDSFLEKQNLRRNV 230 VC+MR + AK +E LD + A +L + G +D L R + Sbjct: 182 VCVMRKNHPLAK--------VELTLD-NYCAAHHLLVSFSGRAKGLMDEALTNLGRERRI 232 Query: 231 VVESAHFRMLPYMVAQTDLVLTAGQQFARFYEKLLPLKSYTVPIKFPPLRFYQLWHERVH 290 ++ F +VA +DL+ + L + +P + P + LWHER Sbjct: 233 LLTVNQFFTAGRVVASSDLITVLPRHLIASTGMAEALIAKDLPFELPDVHVDMLWHERDA 292 Query: 291 QATEHKWLRAQVSAAAK 307 + HKWLR Q+SA+ + Sbjct: 293 RNPAHKWLREQLSASTE 309 >gi|152982397|ref|YP_001353609.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 284 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Query: 13 IRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMVPTQHGESLL 72 +R+ + E + A KL Q QP++ LR L E G L RG+ G + T G ++L Sbjct: 7 LRVFLAIAREGTLGAAARKLGQTQPTMGRRLRALEEAVGHKLFQRGSSGFILTDEGAAVL 66 Query: 73 KPAKRILDETERLFVPKTAFVPQEEERTFHLAAPDYMNTPFFTEVIARVRRESPRSRI 130 A+R+ DE E F + A Q+ E + + D+ T V+A R PR I Sbjct: 67 IHAERMADEAE-AFQRQLAGQDQQLEGLLRITSSDWFGTHVLAPVLADFTRMHPRVTI 123 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 715,130 Number of extensions: 28260 Number of successful extensions: 119 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 4 Length of query: 314 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 231 Effective length of database: 914,170 Effective search space: 211173270 Effective search space used: 211173270 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)