BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3208.p
         (117 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981524|ref|YP_001352208.1| transthyretin-like protein [Jan...   206   2e-55

>gi|152981524|ref|YP_001352208.1| transthyretin-like protein
           [Janthinobacterium sp. Marseille]
          Length = 118

 Score =  206 bits (525), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/118 (85%), Positives = 106/118 (89%), Gaps = 1/118 (0%)

Query: 1   MGKLSTHVLDITKGKPGAGVKLALYAVEQ-GGKRLLKQAVTNDDGRCDEPLLAGDTLQVG 59
           MGKLSTHVLDITKGKPGAGVKLALY V+  G K +LK AVTNDDGRCD PLL G  +QVG
Sbjct: 1   MGKLSTHVLDITKGKPGAGVKLALYTVDAAGNKEILKNAVTNDDGRCDAPLLQGAEMQVG 60

Query: 60  KYELVFAAGDYFAAQGVSLPQPRFVDEVVIAFGIADATQNYHVPLVVSPWAYSTYRGS 117
           KYELVFAAGDYFAAQGV LP PRFVDEVV+AFGIADA+QNYHVPLVVSPWAYSTYRGS
Sbjct: 61  KYELVFAAGDYFAAQGVDLPSPRFVDEVVLAFGIADASQNYHVPLVVSPWAYSTYRGS 118


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 298,957
Number of extensions: 12010
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 45
Effective length of database: 954,837
Effective search space: 42967665
Effective search space used: 42967665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)