BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3206.p
         (756 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981258|ref|YP_001355221.1| outer membrane receptor [Janthi...    65   1e-11

>gi|152981258|ref|YP_001355221.1| outer membrane receptor
           [Janthinobacterium sp. Marseille]
          Length = 718

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 120/306 (39%), Gaps = 46/306 (15%)

Query: 446 ALWAQDVWHLAPAWKATLGARYEWWRAFDGSNYSTAGNTGFAVSQPQISHNGLSPKASLA 505
            ++A+D W +      T+G R++        N+ST G                +P+  L 
Sbjct: 417 GVFAEDEWRIRKDLALTVGVRHD--------NHSTFGG-------------ATTPRMYLV 455

Query: 506 WAVADDWLATLSTGRALRFPTVGELYQNVQVNG----VFLQANPNLKPEKVWSTELAIEK 561
           W   D W       +A R P + +L   +   G    + L  NP L+PE+  S+EL    
Sbjct: 456 WNATDQWTFKGGVSKAYRTPGLEQLVNGLSGIGGQGTIPLYGNPALQPERSVSSELGTYF 515

Query: 562 QLQQGQGKWRVSLFEERVADALISQSSTI---GSGVASFTQNVDRTRQRGIEAAFERNDL 618
              +G  +   ++F+    DA+ + S+ +   G    SF  NV     +G+E        
Sbjct: 516 DNNKGF-RANATIFQTDFKDAISTISNYVPPGGGAQGSFPVNVSNATVKGLE-------- 566

Query: 619 LLRGFSLNGSLTWVDA-RILENRGYV-ATIPGATSVGKRTPYVPEWRATLVASYKPDDRW 676
                 L GSL +    R+  N  Y  +      ++GK     P+  A +   ++  ++ 
Sbjct: 567 ------LGGSLEFARVWRVAANYTYTDSEQKTGANIGKPLENTPKHAANVKLDWRTSEQL 620

Query: 677 TYTLAGRYSGRVYATVDNTDINTHTYQG-FDGYTVFDARVRYRFDQHWSGAMGVDNLTNR 735
                  Y    Y   DN   NT    G F  YT+ +    Y+ ++ ++  M V+NL N+
Sbjct: 621 NLWAQAEYKSERYRPEDNATSNTKALLGDFKAYTLLNVGGTYKINKSFAINMAVNNLLNK 680

Query: 736 DYFLFH 741
           D+  + 
Sbjct: 681 DFVAYR 686


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.129    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,831,087
Number of extensions: 78752
Number of successful extensions: 279
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 3
Length of query: 756
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 666
Effective length of database: 888,291
Effective search space: 591601806
Effective search space used: 591601806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)