BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3204.p
         (443 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982107|ref|YP_001352212.1| hypothetical protein mma_0522 [...    60   3e-10

>gi|152982107|ref|YP_001352212.1| hypothetical protein mma_0522
           [Janthinobacterium sp. Marseille]
          Length = 699

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 94/198 (47%)

Query: 23  AGRLDQAEEHYRVALDLDERHGPSQHYLGILLHQQGQHEAALALMHQASQSRPANADWCN 82
           +G L +AE+  + A+ L      + + LGI+L + G+ EA+L  + +A   RP +A   N
Sbjct: 97  SGLLVEAEQAGQRAVSLAPNLADAWNNLGIILQESGKLEASLDSLERALALRPNDARAHN 156

Query: 83  DLGNVLFACQQFEQAVQAYEQALVLRPEDAQLWTNLGAARRAQGQADAAIAACQRALALT 142
           +LGN      + EQA Q Y++AL L P  A++ +NL       G+ + A AA + A++L 
Sbjct: 157 NLGNTWRRLYRLEQAEQHYQKALELEPGYAEVHSNLAYLLNTHGRFEEAAAAARHAISLQ 216

Query: 143 PQYLPALQQLAELYAQQGHTMLSSRYQCMAYVLPPHEGKSRELLATCCYFLGRIDEAAEI 202
           PQ + A   LA++   +     + R     Y   P         A     + R +EA   
Sbjct: 217 PQLVDAYLNLADIEVSRLRYAEALRSLDALYTFAPQHVGGFSARAQILRKMERNEEALIW 276

Query: 203 CRQWLLEEPGHPIASHMH 220
            ++ L+  P +  A + H
Sbjct: 277 AQRALISAPDNANAHYAH 294



 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 69/135 (51%)

Query: 10  VEESFSEAFTHHVAGRLDQAEEHYRVALDLDERHGPSQHYLGILLHQQGQHEAALALMHQ 69
           + E+   A+ H  AG+  QAE   R  L        + H LG++ H  G+ + A++ + Q
Sbjct: 16  IPEALKRAYAHWDAGQAQQAEMLCRHVLLAWPYQADAMHLLGLIAHAHGRLDMAVSHLRQ 75

Query: 70  ASQSRPANADWCNDLGNVLFACQQFEQAVQAYEQALVLRPEDAQLWTNLGAARRAQGQAD 129
           A Q+  A A + ++L  +        +A QA ++A+ L P  A  W NLG   +  G+ +
Sbjct: 76  ACQAPHAPAIYFSNLAEMCRQSGLLVEAEQAGQRAVSLAPNLADAWNNLGIILQESGKLE 135

Query: 130 AAIAACQRALALTPQ 144
           A++ + +RALAL P 
Sbjct: 136 ASLDSLERALALRPN 150


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 939,148
Number of extensions: 37364
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 2
Length of query: 443
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 357
Effective length of database: 903,079
Effective search space: 322399203
Effective search space used: 322399203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)