BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3201.p
         (277 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982906|ref|YP_001352615.1| hypothetical protein mma_0925 [...   357   e-100

>gi|152982906|ref|YP_001352615.1| hypothetical protein mma_0925
           [Janthinobacterium sp. Marseille]
          Length = 282

 Score =  357 bits (915), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/275 (61%), Positives = 208/275 (75%)

Query: 1   MTAHTITAGLGLKPQHFDAALACTASGLWFEVHPENYLMDGGPRLAWLQAIREQHPLALH 60
           M    + AGLGLK QH++ AL C  +GLWFEVHPENY++ GGPRL WL AIRE+HP++LH
Sbjct: 1   MNKPELGAGLGLKSQHYEEALNCADTGLWFEVHPENYMVAGGPRLRWLDAIRERHPISLH 60

Query: 61  GVSLSLAGPDAPDPEHLRQLAQLAARIEPVLVSEHLAWSRNDGHYLPDLLPVPRTSDTLA 120
           GVSLSLA    P+ EHL++L++L  R EP LVSEHLAWS    HY PDLLP PRT+ +LA
Sbjct: 61  GVSLSLAADAPPNAEHLKKLSELINRTEPALVSEHLAWSAWGDHYYPDLLPFPRTNASLA 120

Query: 121 RLAANIGRTQDVLKRRIALENPSHYLHMEQHGWSEPDFLQELVRRTGCGLLVDVNNVHVS 180
           R+A NI RTQD L RRIA+ENP+HYL ++QH W E DFL ELV+RTGCGLL+DVNNV +S
Sbjct: 121 RIAGNIERTQDRLGRRIAVENPTHYLRLDQHEWDEIDFLSELVKRTGCGLLLDVNNVFIS 180

Query: 181 ATNLGLDAHDYLDQLPASAILEIHLAGHSADASLPGLLIDSHDAPVAPVVWALYQYLIER 240
           A NL  DA  YL+++P  A++EIHLAGH+ D +   LLIDSHDA +AP VWALY   IER
Sbjct: 181 ANNLQFDATQYLERVPGEAVMEIHLAGHNEDKNNTSLLIDSHDAAIAPDVWALYSVFIER 240

Query: 241 IGRRPTLIERDGQVPSFATLLAERSQASAMLAQEQ 275
           IG RPTLIERD  +P+F+ L  ER  A  +L +++
Sbjct: 241 IGSRPTLIERDDHIPAFSVLQKEREHAQDVLTRQK 275


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 733,439
Number of extensions: 32074
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 195
Effective length of database: 917,867
Effective search space: 178984065
Effective search space used: 178984065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)