BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3199.p
         (213 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981652|ref|YP_001352595.1| hypothetical protein mma_0905 [...   120   8e-29
gi|152981749|ref|YP_001355233.1| hypothetical protein mma_3543 [...   115   1e-27

>gi|152981652|ref|YP_001352595.1| hypothetical protein mma_0905
           [Janthinobacterium sp. Marseille]
          Length = 212

 Score =  120 bits (300), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/190 (43%), Positives = 106/190 (55%), Gaps = 1/190 (0%)

Query: 24  RMAVALALGLLGAALLLAILYGVRSDLRQLLQQPLFWMKVSFPLAALLAAQVAAARLARP 83
           R+A  + LGLL    L+    GVR +L Q+L  P FWMK  F +A      +AA RL+ P
Sbjct: 24  RIATHITLGLLVTIALMMTFLGVRENLLQVLMLPAFWMKFIFVIALASIGLIAARRLSSP 83

Query: 84  GMRIGLGPATALLLPPAVLWLAGGSWLALAPPSQRLELLLGSSWEVCSLNVALLSLPTLA 143
           G +    PA  L +P  ++W      L  A P +R EL  G +W+ C   ++ LS+P   
Sbjct: 84  GGKTNRVPAM-LAVPIVIIWSIAAVSLMTAAPGERAELFWGDTWKACPFVISGLSIPIFI 142

Query: 144 TMLWFLRGFAPTRLRAAGAVAGLVAGAQGVLVYTLYCVEMAPPFWGVWYVLGVLLPTLAG 203
            +L  +R  APTRLR AGA AGL AGA    VY L+C EMA PF G WY+LG+L+P L G
Sbjct: 143 AILSAMRELAPTRLRLAGAAAGLTAGAAAAAVYCLHCPEMAAPFVGFWYLLGILIPALIG 202

Query: 204 AWCGPWLLRW 213
              GP  L W
Sbjct: 203 TLIGPRALSW 212


>gi|152981749|ref|YP_001355233.1| hypothetical protein mma_3543
           [Janthinobacterium sp. Marseille]
          Length = 213

 Score =  115 bits (289), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/195 (40%), Positives = 112/195 (57%), Gaps = 5/195 (2%)

Query: 19  RHAAARMAVALALGLLGAALLLAILYGVRSDLRQLLQQPLFWMKVSFPLAALLAAQVAAA 78
           RH AA +   L   LL   L+LA L G+R ++ +L   P FW+K++F LA ++   +A  
Sbjct: 24  RHFAALITGGL---LLSIVLMLAFL-GLRPNMAELAMLPAFWIKMAFVLALVVCGWLAVT 79

Query: 79  RLARPGMRIGLGPATALLLPPAVLWLAGGSWLALAPPSQRLELLLGSSWEVCSLNVALLS 138
           RL+ PG R    P   +  P  ++WL   + +    P QR  L  G +W  CS  +A+LS
Sbjct: 80  RLSAPGARTSTLPLL-IATPIVLIWLVAATSMMNTTPDQRAYLFWGDTWHYCSWLIAILS 138

Query: 139 LPTLATMLWFLRGFAPTRLRAAGAVAGLVAGAQGVLVYTLYCVEMAPPFWGVWYVLGVLL 198
           LP    +L  +R   PTRLR AGA AG  AG    LVY+ +C E+A PF G WY++G+L+
Sbjct: 139 LPIFVALLKVMRELGPTRLRLAGAGAGFAAGTAATLVYSFHCPEIAAPFIGFWYLIGILI 198

Query: 199 PTLAGAWCGPWLLRW 213
           P++ GA  GP +LRW
Sbjct: 199 PSIIGAIIGPRVLRW 213


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.138    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 308,193
Number of extensions: 6913
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 2
Length of query: 213
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 134
Effective length of database: 928,958
Effective search space: 124480372
Effective search space used: 124480372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)