BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3197.p
         (213 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981652|ref|YP_001352595.1| hypothetical protein mma_0905 [...   155   1e-39
gi|152981749|ref|YP_001355233.1| hypothetical protein mma_3543 [...   150   6e-38

>gi|152981652|ref|YP_001352595.1| hypothetical protein mma_0905
           [Janthinobacterium sp. Marseille]
          Length = 212

 Score =  155 bits (393), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/214 (46%), Positives = 139/214 (64%), Gaps = 3/214 (1%)

Query: 1   MKTDDLISMMASG-VAPVDRRLPMRQMLQALVLGGVGALILMLTIYGLRPDLSVMLGVPL 59
           MKTDDLI+M+ASG + P  + +P+ ++   + LG +  + LM+T  G+R +L  +L +P 
Sbjct: 1   MKTDDLINMLASGDIKP--QPIPILRIATHITLGLLVTIALMMTFLGVRENLLQVLMLPA 58

Query: 60  FWIKLAFPTTLAIGAMLVLRRLVRPGLRVGLNWAGIALPSLAIWAAGALVLVSTPLAQRL 119
           FW+K  F   LA   ++  RRL  PG +     A +A+P + IW+  A+ L++    +R 
Sbjct: 59  FWMKFIFVIALASIGLIAARRLSSPGGKTNRVPAMLAVPIVIIWSIAAVSLMTAAPGERA 118

Query: 120 PLVLGISWRSCPFNIALLSVPLFIGIFWAVRGMAPTRLRLTGAVAGLLAGASATMVYCLH 179
            L  G +W++CPF I+ LS+P+FI I  A+R +APTRLRL GA AGL AGA+A  VYCLH
Sbjct: 119 ELFWGDTWKACPFVISGLSIPIFIAILSAMRELAPTRLRLAGAAAGLTAGAAAAAVYCLH 178

Query: 180 CPEMEVPFWGIWYFLGMVIPAAAGLLLGPRLLRW 213
           CPEM  PF G WY LG++IPA  G L+GPR L W
Sbjct: 179 CPEMAAPFVGFWYLLGILIPALIGTLIGPRALSW 212


>gi|152981749|ref|YP_001355233.1| hypothetical protein mma_3543
           [Janthinobacterium sp. Marseille]
          Length = 213

 Score =  150 bits (379), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 134/214 (62%), Gaps = 2/214 (0%)

Query: 1   MKTDDLISMMASGVAPVDRRLPMRQMLQALVLGGVG-ALILMLTIYGLRPDLSVMLGVPL 59
           MKTDDLI+M+ASG      +LP+R    AL+ GG+  +++LML   GLRP+++ +  +P 
Sbjct: 1   MKTDDLINMLASGPDVAAPKLPLRH-FAALITGGLLLSIVLMLAFLGLRPNMAELAMLPA 59

Query: 60  FWIKLAFPTTLAIGAMLVLRRLVRPGLRVGLNWAGIALPSLAIWAAGALVLVSTPLAQRL 119
           FWIK+AF   L +   L + RL  PG R       IA P + IW   A  +++T   QR 
Sbjct: 60  FWIKMAFVLALVVCGWLAVTRLSAPGARTSTLPLLIATPIVLIWLVAATSMMNTTPDQRA 119

Query: 120 PLVLGISWRSCPFNIALLSVPLFIGIFWAVRGMAPTRLRLTGAVAGLLAGASATMVYCLH 179
            L  G +W  C + IA+LS+P+F+ +   +R + PTRLRL GA AG  AG +AT+VY  H
Sbjct: 120 YLFWGDTWHYCSWLIAILSLPIFVALLKVMRELGPTRLRLAGAGAGFAAGTAATLVYSFH 179

Query: 180 CPEMEVPFWGIWYFLGMVIPAAAGLLLGPRLLRW 213
           CPE+  PF G WY +G++IP+  G ++GPR+LRW
Sbjct: 180 CPEIAAPFIGFWYLIGILIPSIIGAIIGPRVLRW 213


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.331    0.145    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 388,066
Number of extensions: 12239
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 213
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 134
Effective length of database: 928,958
Effective search space: 124480372
Effective search space used: 124480372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)