BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3196.p (606 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 384 e-107 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 372 e-104 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 370 e-103 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 370 e-103 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 363 e-101 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust. Identities = 237/393 (60%), Positives = 284/393 (72%), Gaps = 19/393 (4%) Query: 174 AYMDDINAAFMGTLTRMAILFAVVAAALVALVIVINRGILRTIGGDPAK-AAEVANRIAQ 232 A + D+ AA + ++ +L A+V A + + GI R P K A + A R+A Sbjct: 180 AQLSDVEAA---STRQLMLLSAMVLAFGIFCAWRLTIGITR-----PLKTAVDAARRVAG 231 Query: 233 GDLTPNIDTQPGDQS-SLLYAVRGMRDSLLSTIANIKSSATTIASASHEIARGNLDLSGR 291 GDLT +I + D+ LL A++ M D L + ++ TI +AS+EIA GNLDLS R Sbjct: 232 GDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSR 291 Query: 292 TEQQAGSLEETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMEGI 351 TEQQA SLEETAS+MEELT+TVKQNADNARQANQLA SASEVA++GG VV QVVQTM I Sbjct: 292 TEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSI 351 Query: 352 TESSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA 411 ESSRKI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSASAA Sbjct: 352 NESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAA 411 Query: 412 KEIKTLIDDSVAKVDSGSKLVEQAGTTMTEVVASVRRVTDIVGEISSASQEQSAGIAEVG 471 KEIK LI DSV KVD+G+KLV +AG TM E+V S+RRVTDI+GEI++ASQEQSAGI ++ Sbjct: 412 KEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQIN 471 Query: 472 RAITQMDEGTQQNAALVEQAAAAAQSLQDQAATLAGLVGRFQIDGSQAHAVQAAPTAA-- 529 +AI QMD TQQNA+LVE+AAAAA+S+QDQA L +VG F++D +Q +A P A Sbjct: 472 QAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQ----EANPPRASG 527 Query: 530 VKSAASKPAARPT--TTAAPSPAQRKPVAAHPA 560 V A KPAA AAP P QR+ A PA Sbjct: 528 VTRLAPKPAAGSAGLAVAAPLP-QRRANGALPA 559 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 372 bits (955), Expect = e-104, Method: Compositional matrix adjust. Identities = 219/377 (58%), Positives = 271/377 (71%), Gaps = 5/377 (1%) Query: 153 PVPKTSFVIAYQPWDWNLTTGAYMDDINAAFMGTLTRMAILFAVVAAALVALVIVINRGI 212 PV F+ +D+ G+ M+ A T + + ++A + L I + + Sbjct: 155 PVQVKYFIALDAMFDYQ---GSLMNVAGDAASATSVQARTIINILAGISLLLSIAVGWWV 211 Query: 213 LRTIGGDPAKAAEVANRIAQGDLT-PNIDTQPGDQSSLLYAVRGMRDSLLSTIANIKSSA 271 R+I A VA R+AQGDL+ P + L+ A++ M D+L + +++ Sbjct: 212 TRSITRPLNTAVGVARRVAQGDLSGPVFVKTTNEVGQLMAALKTMNDNLHHIVTQVRNGT 271 Query: 272 TTIASASHEIARGNLDLSGRTEQQAGSLEETASAMEELTATVKQNADNARQANQLAESAS 331 TIA+AS EIARGN+DLS RTEQQA SLEETASAMEELT+TV++NADNA+QANQLA SA+ Sbjct: 272 GTIANASGEIARGNMDLSSRTEQQASSLEETASAMEELTSTVRENADNAQQANQLAASAT 331 Query: 332 EVAIQGGSVVGQVVQTMEGITESSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGR 391 +VA QGGSVV +V+ TM I SS+KIADI GVID IAFQTNILALNAAVEAARAGEQGR Sbjct: 332 KVARQGGSVVHEVIATMAAINTSSKKIADITGVIDSIAFQTNILALNAAVEAARAGEQGR 391 Query: 392 GFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKVDSGSKLVEQAGTTMTEVVASVRRVTD 451 GFAVVASEVR+LAQRSA+AA EIK LIDDSVAKVD+GSKLV+QAG T+ EVV SV ++ Sbjct: 392 GFAVVASEVRNLAQRSATAAMEIKALIDDSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSG 451 Query: 452 IVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVEQAAAAAQSLQDQAATLAGLVGR 511 IV IS+ASQEQSAGI +VG+AI Q+DEGTQQNAALVEQ+AAAAQSL++QA L LV Sbjct: 452 IVAAISNASQEQSAGIEQVGQAIVQIDEGTQQNAALVEQSAAAAQSLREQADQLMQLVSI 511 Query: 512 FQIDGSQAHAVQAAPTA 528 F++D Q+ A AAP A Sbjct: 512 FKLD-RQSVATSAAPAA 527 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust. Identities = 220/360 (61%), Positives = 271/360 (75%), Gaps = 9/360 (2%) Query: 202 VALVIVINRGILRTIGGDPAKAAEVANRIAQGDLTPNIDTQPGDQS-SLLYAVRGMRDSL 260 + L IVI+R I R + +A VA +A GDLT I+ + D++ LL A++ M SL Sbjct: 200 IGLGIVISRSITRPLN----EAVLVAQTVASGDLTSQINVKSKDETGQLLQALKDMNQSL 255 Query: 261 LSTIANIKSSATTIASASHEIARGNLDLSGRTEQQAGSLEETASAMEELTATVKQNADNA 320 + + ++S T+A+AS++IA GN+DLS RTE+QA SLEETAS+MEELT+TVKQNADNA Sbjct: 256 IGIVDEVRSGTATMATASNQIASGNMDLSSRTEEQASSLEETASSMEELTSTVKQNADNA 315 Query: 321 RQANQLAESASEVAIQGGSVVGQVVQTMEGITESSRKIADIIGVIDGIAFQTNILALNAA 380 RQAN L+ SASE+A++GG VV +VV TM GI +S++KI DIIGVIDGIAFQTNILALNAA Sbjct: 316 RQANSLSLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDIIGVIDGIAFQTNILALNAA 375 Query: 381 VEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKVDSGSKLVEQAGTTMT 440 VEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LIDDSV +VD+GSKLV QAG+TMT Sbjct: 376 VEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSVGRVDTGSKLVVQAGSTMT 435 Query: 441 EVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVEQAAAAAQSLQD 500 EVV SV+RVTDI+ EI +ASQEQSAGI +V +AI QMD TQQNAALVE+AAAAA SL+D Sbjct: 436 EVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQQNAALVEEAAAAAGSLKD 495 Query: 501 QAATLAGLVGRFQIDGSQAHAVQAAPTAAVKSAASKPAARPTTTA---APSPAQRKPVAA 557 QA L V F+ID S + T +V+S +PA ++ A SP +R V A Sbjct: 496 QAVKLEQTVSVFKIDASAPQQTEHQDT-SVRSTPVRPALASKLSSIKRAVSPPRRLAVVA 554 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 370 bits (949), Expect = e-103, Method: Compositional matrix adjust. Identities = 214/345 (62%), Positives = 272/345 (78%), Gaps = 6/345 (1%) Query: 200 ALVALVIVINRGIL--RTIGGDPAKAAEVANRIAQGDLTPNIDTQPGDQS-SLLYAVRGM 256 +++A++I G L R+I ++A +A ++A GDLT I D++ LL A++ M Sbjct: 194 SVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSKDETGQLLQALQDM 253 Query: 257 RDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEQQAGSLEETASAMEELTATVKQN 316 + L+ + ++ TIA+AS +IA GNLDLS RTE+QA SLEETAS+MEELT+TVKQN Sbjct: 254 NNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQN 313 Query: 317 ADNARQANQLAESASEVAIQGGSVVGQVVQTMEGITESSRKIADIIGVIDGIAFQTNILA 376 ADNARQ+NQLA +ASEVA++GG+VV QVV+TM I +S+ KI DIIGVIDGIAFQTNILA Sbjct: 314 ADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIGVIDGIAFQTNILA 373 Query: 377 LNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKVDSGSKLVEQAG 436 LNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIKTLIDDSV KV++GS+LV AG Sbjct: 374 LNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVEKVNNGSRLVHDAG 433 Query: 437 TTMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVEQAAAAAQ 496 TTM EVV SVRRVTDI+GEI++ASQEQ+ GI ++ +A+ QMD+ TQQNAALVE+AAAAA+ Sbjct: 434 TTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEEAAAAAE 493 Query: 497 SLQDQAATLAGLVGRFQIDGSQAHAVQAAPTAAVKSAASKPAARP 541 SLQDQA L+ +V F++D A+AV T+ V + AS+P ++P Sbjct: 494 SLQDQANNLSQVVSVFKLD---ANAVALQATSRVAAPASRPVSKP 535 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 363 bits (931), Expect = e-101, Method: Compositional matrix adjust. Identities = 209/337 (62%), Positives = 264/337 (78%), Gaps = 6/337 (1%) Query: 193 LFAVVAAALVALVIVI-NRGILRTIGGDPAKAAEVANRIAQGDLTPNIDTQPGDQS-SLL 250 +F+++A + A+ V+ R I R + ++A +A ++A GDLT +I + D++ LL Sbjct: 192 IFSIIAVLIAAVFAVLATRSITRPL----SQAVVLARKVADGDLTGSIVVESKDETGQLL 247 Query: 251 YAVRGMRDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEQQAGSLEETASAMEELT 310 A++ M + LL + ++ TIASASH+IA GNLDLS RTEQQA SLEETAS+MEELT Sbjct: 248 QALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETASSMEELT 307 Query: 311 ATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMEGITESSRKIADIIGVIDGIAF 370 +TVKQNA+NARQ+NQLA SASEVA++GG+VV +VV TM I +S++KI DIIGVIDGIAF Sbjct: 308 STVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIGVIDGIAF 367 Query: 371 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKVDSGSK 430 QTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIK LI DSV KV GS+ Sbjct: 368 QTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVDKVSIGSR 427 Query: 431 LVEQAGTTMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVEQ 490 LV+ AG TM EVV SV+RVTDI+ EI++ASQEQ+ GI ++ +A+ QMD+ TQQNAALVE+ Sbjct: 428 LVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEE 487 Query: 491 AAAAAQSLQDQAATLAGLVGRFQIDGSQAHAVQAAPT 527 AAAAA+SLQ QA+ L+ +VG F++DG V A PT Sbjct: 488 AAAAAESLQGQASHLSQVVGVFKLDGHGTTVVNAVPT 524 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.124 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 824,400 Number of extensions: 26114 Number of successful extensions: 172 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 119 Number of HSP's successfully gapped: 21 Length of query: 606 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 517 Effective length of database: 891,988 Effective search space: 461157796 Effective search space used: 461157796 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)