BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3195.p
         (258 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981868|ref|YP_001355267.1| hypothetical protein mma_3577 [...   207   5e-55

>gi|152981868|ref|YP_001355267.1| hypothetical protein mma_3577
           [Janthinobacterium sp. Marseille]
          Length = 258

 Score =  207 bits (527), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 113/222 (50%), Positives = 145/222 (65%), Gaps = 1/222 (0%)

Query: 32  RRRAPRTGLALMLLGVALLLVLSTRVAALWLIQPLQRQYPPLTHPGQIKQAQAIVILGSG 91
           R R PR GL L +L + +L + STR  A   I PL++  PPL   G    AQAIV+LG G
Sbjct: 32  RPRWPRLGLGLSVLALVVLALCSTRFGATLFISPLEKFNPPL-QLGDASGAQAIVVLGGG 90

Query: 92  RIDAAPEYGGSDEPTPIGMKRLQYGAFLQRQSGLPILVSGGSPDGSPESEAALMARSLQR 151
           RI  A EY G D P+   + RL+Y A L R + LP+LVSGG PDG+  SEAA+MAR L+ 
Sbjct: 91  RISNALEYAGQDIPSSPTLHRLRYAATLYRTTHLPVLVSGGQPDGAAVSEAAVMARVLRE 150

Query: 152 DFGVPVRWQETHSDTTAQNARDSAALLKAEGITRILLVTDSVHMPRAMRAFAQTGLQVQA 211
           DF VPVRW E  S+ TA+NA+ SA +L+  G+  ILLVTD++HM RA + F Q GL+V A
Sbjct: 151 DFSVPVRWLEQASNNTAENAQLSARMLREAGVKHILLVTDAMHMQRAKQVFTQAGLKVVA 210

Query: 212 APTLLLQPARARVSDYLPGASHLQMSSYALRERIGQWWYRVR 253
           APT+ +  AR   +D+LP +  LQ +SYAL E +G  WYR R
Sbjct: 211 APTIFISNARHTPADFLPSSQWLQQTSYALHEWLGLAWYRWR 252


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 484,404
Number of extensions: 17347
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 177
Effective length of database: 921,564
Effective search space: 163116828
Effective search space used: 163116828
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)