BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3188.p
         (354 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980020|ref|YP_001354203.1| dihydroorotate dehydrogenase 2 ...   561   e-161

>gi|152980020|ref|YP_001354203.1| dihydroorotate dehydrogenase 2
           [Janthinobacterium sp. Marseille]
          Length = 345

 Score =  561 bits (1446), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 271/346 (78%), Positives = 306/346 (88%), Gaps = 1/346 (0%)

Query: 1   VSDKFLYALARPLLFSLQPETAHHLVLPALRCAAHYSLTDFITKKPAADPRTVMGIRFPN 60
           +SDK LY LARP LF++ PE AH+L LPALR AA   LT  I K PA DPRTVMGI FPN
Sbjct: 1   MSDKLLYTLARPFLFAIDPEAAHNLTLPALRRAAAMGLTSSIVK-PAHDPRTVMGITFPN 59

Query: 61  PVGMAAGLDKDGAYIDGLAALGFGFIEVGTVTPRAQPGNPLPRMFRLPAANAVINRMGFN 120
           PVG+AAGLDKDGAYIDGLA LGFG IEVGTVTPRAQPGNP+PRMFRLP ANA+INRMGFN
Sbjct: 60  PVGLAAGLDKDGAYIDGLATLGFGSIEVGTVTPRAQPGNPMPRMFRLPKANAIINRMGFN 119

Query: 121 NGGVDAFVANVQSSRFYQERQGVLGLNIGKNADTPIERAAEDYVHCLEKVYPYASYVTVN 180
           NGG DAFVANV+SS+FYQ ++GVLGLNIGKNADTPIERA +DY+ CLEKVYPYASYVTVN
Sbjct: 120 NGGADAFVANVRSSKFYQNKEGVLGLNIGKNADTPIERAVDDYLICLEKVYPYASYVTVN 179

Query: 181 ISSPNTKNLRQLQGASELDALLSQLKSAQRRLADRHGRYVPVALKIAPDMDMEQVKNVAD 240
           ISSPNTKNLRQLQGASELDALLSQLK AQ+RL+D+H RYVP+ALKIAPDM++EQ++ +A 
Sbjct: 180 ISSPNTKNLRQLQGASELDALLSQLKEAQQRLSDQHKRYVPIALKIAPDMELEQIQTIAQ 239

Query: 241 ALLRHQIDGVIATNTTITRDAVQGMPHGEEAGGLSGKPVLELSNQVIRGLKAEVGDALPI 300
           ALLRH++DGVIATNTT++R+AV+G+ + EE GGLSG PV E SN VIR LK+E+GDALPI
Sbjct: 240 ALLRHKMDGVIATNTTVSREAVKGLKYAEETGGLSGAPVFEASNTVIRALKSELGDALPI 299

Query: 301 IGVGGIFSGADARAKIDAGASLVQLYTGLIYQGPALVRECAEALRA 346
           IGVGGI SG DA+AKI AGASLVQLYTGLIY+GPALV+ECA AL A
Sbjct: 300 IGVGGILSGNDAQAKIAAGASLVQLYTGLIYRGPALVKECAAALHA 345


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 836,447
Number of extensions: 37655
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 270
Effective length of database: 910,473
Effective search space: 245827710
Effective search space used: 245827710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)